(Q59850846)

English

Extended LineSets: a visualization technique for the interactive inspection of biological pathways

scholarly article by Francesco Paduano & Angus Graeme Forbes published 2015 in BMC Proceedings

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scholarly article

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Extended LineSets: a visualization technique for the interactive inspection of biological pathways (English)

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author name string

Francesco Paduano

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Angus Graeme Forbes

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language of work or name

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publication date

2015

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BMC Proceedings

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9

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Suppl 6 Proceedings of the 5th Symposium on Biological Data

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S4

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describes a project that uses

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Cytoscape

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

https://scigraph.springernature.com/pub.10.1186/1753-6561-9-s6-s4

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Entourage: visualizing relationships between biological pathways using contextual subsets

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https://pubmed.ncbi.nlm.nih.gov/26361500

12 December 2020

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Bubble sets: revealing set relations with isocontours over existing visualizations.

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https://pubmed.ncbi.nlm.nih.gov/26361500

12 December 2020

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Untangling euler diagrams

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https://pubmed.ncbi.nlm.nih.gov/26361500

12 December 2020

based on heuristic

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The Reactome pathway knowledgebase

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https://pubmed.ncbi.nlm.nih.gov/26361500

12 December 2020

based on heuristic

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UpSet: Visualization of Intersecting Sets.

1 reference

https://pubmed.ncbi.nlm.nih.gov/26361500

12 December 2020

based on heuristic

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Cell-cycle-dependent regulation of DNA replication and its relevance to cancer pathology

1 reference

https://pubmed.ncbi.nlm.nih.gov/26361500

12 December 2020

based on heuristic

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Cytoscape: a software environment for integrated models of biomolecular interaction networks

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https://pubmed.ncbi.nlm.nih.gov/26361500

12 December 2020

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Pathway Commons, a web resource for biological pathway data

1 reference

https://pubmed.ncbi.nlm.nih.gov/26361500

12 December 2020

based on heuristic

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eXamine: exploring annotated modules in networks.

1 reference

https://pubmed.ncbi.nlm.nih.gov/26361500

12 December 2020

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Design study of LineSets, a novel set visualization technique

1 reference

https://pubmed.ncbi.nlm.nih.gov/26361500

12 December 2020

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OnSet: A Visualization Technique for Large-scale Binary Set Data

1 reference

https://pubmed.ncbi.nlm.nih.gov/26361500

12 December 2020

based on heuristic

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VitaPad: visualization tools for the analysis of pathway data

1 reference

https://pubmed.ncbi.nlm.nih.gov/26361500

12 December 2020

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Metabolic network visualization eliminating node redundance and preserving metabolic pathways

1 reference

https://pubmed.ncbi.nlm.nih.gov/26361500

12 December 2020

based on heuristic

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Reactome: a knowledgebase of biological pathways

1 reference

https://pubmed.ncbi.nlm.nih.gov/26361500

12 December 2020

based on heuristic

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KelpFusion: a hybrid set visualization technique.

1 reference

https://pubmed.ncbi.nlm.nih.gov/26361500

12 December 2020

based on heuristic

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Dynamic exploration and editing of KEGG pathway diagrams

1 reference

https://pubmed.ncbi.nlm.nih.gov/26361500

12 December 2020

based on heuristic

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Towards zoomable multidimensional maps of the cell

1 reference

https://pubmed.ncbi.nlm.nih.gov/26361500

12 December 2020

based on heuristic

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VisANT 4.0: Integrative network platform to connect genes, drugs, diseases and therapies

1 reference

https://pubmed.ncbi.nlm.nih.gov/26361500

12 December 2020

based on heuristic

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ChiBE: interactive visualization and manipulation of BioPAX pathway models

1 reference

https://pubmed.ncbi.nlm.nih.gov/26361500

12 December 2020

based on heuristic

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Combing the hairball with BioFabric: a new approach for visualization of large networks

1 reference

https://pubmed.ncbi.nlm.nih.gov/26361500

12 December 2020

based on heuristic

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VisANT: an online visualization and analysis tool for biological interaction data

1 reference

https://pubmed.ncbi.nlm.nih.gov/26361500

12 December 2020

based on heuristic

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Identifiers

10.1186/1753-6561-9-S6-S4

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PMC publication ID

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PubMed publication ID

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