(Q60050209)

English

Population genomic analyses of RAD sequences resolves the phylogenetic relationship of the lichen-forming fungal species Usnea antarctica and Usnea aurantiacoatra

scholarly article by Felix Grewe et al published 12 December 2018 in MycoKeys

Population genomic analyses of RAD sequences resolves the phylogenetic relationship of the lichen-forming fungal species and

In more languages

Statements

scholarly article

0 references

Population genomic analyses of RAD sequences resolves the phylogenetic relationship of the lichen-forming fungal species Usnea antarctica and Usnea aurantiacoatra (English)

0 references

1 reference

based on heuristic

inferred from title

Usnea aurantiacoatra

object named as

Usnea aurantiacoatra

1 reference

based on heuristic

inferred from title

Usnea antarctica

object named as

Usnea antarctica

1 reference

based on heuristic

inferred from title

Christian Printzen

4

object named as

Christian Printzen

0 references

Helge Thorsten Lumbsch

5

object named as

H. Thorsten Lumbsch

0 references

author name string

Felix Grewe

1

0 references

Elisa Lagostina

2

0 references

Huini Wu

3

0 references

language of work or name

0 references

publication date

12 December 2018

0 references

0 references

43

0 references

43

0 references

91–113

0 references

copyright license

Creative Commons Attribution 4.0 International

12 December 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Analysis of Gene Diversity in Subdivided Populations

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogenetic species recognition and species concepts in fungi

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogenetics and speciation

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bayesian inference of phylogeny and its impact on evolutionary biology

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Delimiting species using DNA and morphological variation and discordant species limits in spiny lizards (Sceloporus).

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic architecture of sexual and asexual populations of the aphid Rhopalosiphum padi based on allozyme and microsatellite markers.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogeny estimation: traditional and Bayesian approaches

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The population genetics of clonal and partially clonal diploids.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic variation in organisms with sexual and asexual reproduction

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Testing "species pair" hypotheses: evolutionary processes in the lichen-forming species complex Porpidia flavocoerulescens and Porpidia melinodes

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A standardized genetic differentiation measure

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A phylogenomic analysis of the Ascomycota

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reconstructing the early evolution of Fungi using a six-gene phylogeny

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cryptic species as a window on diversity and conservation

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Testing morphology-based hypotheses of phylogenetic relationships in Parmeliaceae (Ascomycota) using three ribosomal markers and the nuclear RPB1 gene

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A higher-level phylogenetic classification of the Fungi

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Parallel evoluton in lichen-forming fungi

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Species concepts and species delimitation

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome resequencing and genetic variation

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The delimitation of Antarctic and bipolar species of neuropogonoid Usnea (Ascomycota, Lecanorales): a cohesion approach of species recognition for the Usnea perpusilla complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rapid SNP discovery and genetic mapping using sequenced RAD markers

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A rapid bootstrap algorithm for the RAxML Web servers

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Assessing the gene space in draft genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

G(ST) and its relatives do not measure differentiation

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The search for the fungal tree of life

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cladonia pyxidata and C. pocillum; genetic evidence to regard them as conspecific

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

adephylo: new tools for investigating the phylogenetic signal in biological traits

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNA sequencing: advances, challenges and opportunities

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

and D do not replace FST

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The variant call format and VCFtools

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Fast gapped-read alignment with Bowtie 2

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cryptic species in lichen-forming fungi

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MMOD: an R library for the calculation of population differentiation statistics

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The binning of metagenomic contigs for microbial physiology of mixed cultures

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inferring phylogeny and introgression using RADseq data: an example from flowering plants (Pedicularis: Orobanchaceae)

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome sequencing and population genomics in non-model organisms

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Trimmomatic: a flexible trimmer for Illumina sequence data

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A framework phylogeny of the American oak clade based on sequenced RAD data

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genotyping-by-sequencing as a tool to infer phylogeny and ancestral hybridization: a case study in Carex (Cyperaceae).

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylotranscriptomic analysis of the origin and early diversification of land plants

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Resolving evolutionary relationships in lichen-forming fungi using diverse phylogenomic datasets and analytical approaches

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The report of my death was an exaggeration: A review for researchers using microsatellites in the 21st century.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative genomics reveals convergent rates of evolution in ant-plant mutualisms

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetics and the conservation of natural populations: allozymes to genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conflicting phylogenomic signals reveal a pattern of reticulate evolution in a recent high-Andean diversification (Asteraceae: Astereae: Diplostephium).

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Replacing Sanger with Next Generation Sequencing to improve coverage and quality of reference DNA barcodes for plants

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reference-based RADseq resolves robust relationships among closely related species of lichen-forming fungi using metagenomic DNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RADpainter and fineRADstructure: population inference from RADseq data.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RAD sequencing resolved phylogenetic relationships in European shrub willows (Salix L. subg. Chamaetia and subg. Vetrix) and revealed multiple evolution of dwarf shrubs

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The use of microsatellite markers for species delimitation in Antarctic Usnea subgenus Neuropogon

1 reference

https://pubmed.ncbi.nlm.nih.gov/30588165

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.3897/MYCOKEYS.43.29093

0 references

0 references

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q60050209&oldid=1983318936"