(Q60054249)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30444864%20AND%20SRC:MED&resulttype=core&format=json

4 May 2020

title

Towards a molecular basis of ubiquitin signaling: A dual-scale simulation study of ubiquitin dimers (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30444864%20AND%20SRC:MED&resulttype=core&format=json

4 May 2020

0 references

1

1 reference

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4 May 2020

Oleksandra Kukharenko

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30444864%20AND%20SRC:MED&resulttype=core&format=json

4 May 2020

Martin Scheffner

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30444864%20AND%20SRC:MED&resulttype=core&format=json

4 May 2020

Christine Peter

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30444864%20AND%20SRC:MED&resulttype=core&format=json

4 May 2020

author name string

Andrej Berg

1

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Christine Peter

4

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language of work or name

English

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publication date

16 November 2018

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30444864%20AND%20SRC:MED&resulttype=core&format=json

PLOS Computational Biology

4 May 2020

published in

1 reference

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4 May 2020

volume

14

1 reference

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4 May 2020

issue

11

1 reference

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4 May 2020

page(s)

e1006589

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Creative Commons Attribution 4.0 International

4 May 2020

copyright license

start time

16 November 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Structure of a diubiquitin conjugate and a model for interaction with ubiquitin conjugating enzyme (E2)

1 reference

12 December 2020

1 reference

12 December 2020

Recognition of the polyubiquitin proteolytic signal

1 reference

12 December 2020

Structural properties of polyubiquitin chains in solution

1 reference

12 December 2020

Solution conformation of Lys63-linked di-ubiquitin chain provides clues to functional diversity of polyubiquitin signaling

1 reference

12 December 2020

Various strategies of using residual dipolar couplings in NMR-driven protein docking: application to Lys48-linked di-ubiquitin and validation against 15N-relaxation data

1 reference

12 December 2020

Structural determinants for selective recognition of a Lys48-linked polyubiquitin chain by a UBA domain

1 reference

12 December 2020

Structural Assembly of Multidomain Proteins and Protein Complexes Guided by the Overall Rotational Diffusion Tensor

1 reference

12 December 2020

Coarse-grained models for simulations of multiprotein complexes: application to ubiquitin binding

1 reference

12 December 2020

Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution

1 reference

12 December 2020

The multiscale coarse-graining method. I. A rigorous bridge between atomistic and coarse-grained models

1 reference

12 December 2020

Polyubiquitin binding and disassembly by deubiquitinating enzymes

1 reference

12 December 2020

Molecular discrimination of structurally equivalent Lys 63-linked and linear polyubiquitin chains

1 reference

12 December 2020

Crystal structures of Lys-63-linked tri- and di-ubiquitin reveal a highly extended chain architecture

1 reference

12 December 2020

Ubiquitin-binding domains - from structures to functions

1 reference

12 December 2020

Definition and testing of the GROMOS force-field versions 54A7 and 54B7

1 reference

12 December 2020

From the Cover: Simplifying the representation of complex free-energy landscapes using sketch-map

1 reference

12 December 2020

1 reference

12 December 2020

Structural and biochemical studies of the open state of Lys48-linked diubiquitin

1 reference

12 December 2020

The lysine48-based polyubiquitin chain proteasomal signal: not a single child anymore

1 reference

12 December 2020

Atomic-level description of ubiquitin folding

1 reference

12 December 2020

Optimization of an elastic network augmented coarse grained model to study CCMV capsid deformation

1 reference

12 December 2020

Ubiquitin: molecular modeling and simulations

1 reference

12 December 2020

PolyUbiquitin chain linkage topology selects the functions from the underlying binding landscape

1 reference

12 December 2020

The power of coarse graining in biomolecular simulations.

1 reference

12 December 2020

Lys63-linked ubiquitin chain adopts multiple conformational states for specific target recognition

1 reference

12 December 2020

Linkage-specific conformational ensembles of non-canonical polyubiquitin chains

1 reference

12 December 2020

Going Backward: A Flexible Geometric Approach to Reverse Transformation from Coarse Grained to Atomistic Models.

1 reference

12 December 2020

Demonstrating the Transferability and the Descriptive Power of Sketch-Map

1 reference

12 December 2020

Improved Parameters for the Martini Coarse-Grained Protein Force Field.

1 reference

12 December 2020

Combining an Elastic Network With a Coarse-Grained Molecular Force Field: Structure, Dynamics, and Intermolecular Recognition

1 reference

12 December 2020

The MARTINI Coarse-Grained Force Field: Extension to Proteins.

1 reference

12 December 2020

Linkage via K27 Bestows Ubiquitin Chains with Unique Properties among Polyubiquitins.

1 reference

12 December 2020

Ubiquitin modifications

1 reference

12 December 2020

Coarse-Grained Protein Models and Their Applications

1 reference

12 December 2020

Using Dimensionality Reduction to Systematically Expand Conformational Sampling of Intrinsically Disordered Peptides

1 reference

12 December 2020

An Interaction Landscape of Ubiquitin Signaling.

1 reference

12 December 2020

Identification of Proteins Interacting with Ubiquitin Chains.

1 reference

12 December 2020

Chain Assembly and Disassembly Processes Differently Affect the Conformational Space of Ubiquitin Chains.

1 reference

12 December 2020

10.1371/JOURNAL.PCBI.1006589

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30444864%20AND%20SRC:MED&resulttype=core&format=json

journals/ploscb/BergKSP18

4 May 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30444864%20AND%20SRC:MED&resulttype=core&format=json

4 May 2020

PubMed publication ID

30444864

1 reference