(Q35164774)

6 August 2017

title

From the Cover: Simplifying the representation of complex free-energy landscapes using sketch-map (English)

1 reference

6 August 2017

1 reference

Michele Ceriotti

1

0 references

Michele Parrinello

series ordinal

3

object named as

Michele Parrinello

1 reference

6 August 2017

Gareth A Tribello

2

1 reference

6 August 2017

language of work or name

English

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publication date

5 July 2011

1 reference

Proceedings of the National Academy of Sciences of the United States of America

6 August 2017

published in

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6 August 2017

volume

108

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6 August 2017

issue

32

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6 August 2017

page(s)

13023-13028

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GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

6 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156203

A self-learning algorithm for biased molecular dynamics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156203

Systematic determination of order parameters for chain dynamics using diffusion maps.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156203

Application of nonlinear dimensionality reduction to characterize the conformational landscape of small peptides

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156203

Detecting intrinsic slow variables in stochastic dynamical systems by anisotropic diffusion maps

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156203

Deconstructing the native state: energy landscapes, function, and dynamics of globular proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156203

Canonical sampling through velocity rescaling

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156203

Low-dimensional, free-energy landscapes of protein-folding reactions by nonlinear dimensionality reduction

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156203

Hessian eigenmaps: locally linear embedding techniques for high-dimensional data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156203

Geometric diffusions as a tool for harmonic analysis and structure definition of data: multiscale methods

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156203

Protein conformational space in higher order phi-Psi maps

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156203

Nonlinear dimensionality reduction by locally linear embedding

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156203

Polymer reversal rate calculated via locally scaled diffusion map.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156203

Determination of reaction coordinates via locally scaled diffusion map.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156203

Atomic-level characterization of the structural dynamics of proteins

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156203

How complex is the dynamics of Peptide folding?

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156203

A global geometric framework for nonlinear dimensionality reduction

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156203

Knowledge-based protein secondary structure assignment

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156203

Essential dynamics of proteins

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156203

PLUMED: A portable plugin for free-energy calculations with molecular dynamics

27 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1108486108

Advillin folding takes place on a hypersurface of small dimensionality

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21730167

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Fast and reliable analysis of molecular motion using proximity relations and dimensionality reduction

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21730167

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Large-amplitude nonlinear motions in proteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21730167

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1108486108

1 reference

6 August 2017

0 references

1 reference

6 August 2017

1 reference