(Q64064714)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30835723%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

title

New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30835723%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

main subject

modeling and simulation

0 references

author

Tiago C Silva

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30835723%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Gianluca Bontempi

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30835723%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Elena Papaleo

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30835723%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

author name string

Mohamed Mounir

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30835723%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Marta Lucchetta

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30835723%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Catharina Olsen

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30835723%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Xi Chen

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30835723%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Houtan Noushmehr

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30835723%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Antonio Colaprico

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30835723%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

language of work or name

English

0 references

publication date

5 March 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30835723%20AND%20SRC:MED&resulttype=core&format=json

PLOS Computational Biology

27 April 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30835723%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

volume

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30835723%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

issue

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30835723%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

page(s)

e1006701

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30835723%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons CC0 License

27 April 2020

copyright license

start time

5 March 2019

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

0 references

describes a project that uses

edgeR

object named as

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

ggplot2

object named as

ggplot2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

limma

object named as

limma

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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Using tissue adjacent to carcinoma as a normal control: an obvious but questionable practice

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Involvement of members of the cadherin superfamily in cancer

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ReCount: a multi-experiment resource of analysis-ready RNA-seq gene count datasets

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Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

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12 December 2020

Exploring TCGA Pan-Cancer data at the UCSC Cancer Genomics Browser

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12 December 2020

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voom: Precision weights unlock linear model analysis tools for RNA-seq read counts

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RTCGAToolbox: a new tool for exporting TCGA Firehose data

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12 December 2020

limma powers differential expression analyses for RNA-sequencing and microarray studies

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12 December 2020

Orchestrating high-throughput genomic analysis with Bioconductor

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The Cancer Genome Atlas (TCGA): an immeasurable source of knowledge

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12 December 2020

Cancer whole-genome sequencing: present and future.

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12 December 2020

Next-Generation Sequencing Approaches in Cancer: Where Have They Brought Us and Where Will They Take Us?

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12 December 2020

Comprehensive Molecular Portraits of Invasive Lobular Breast Cancer

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12 December 2020

The Genotype-Tissue Expression (GTEx) Project

1 reference

12 December 2020

TCGA2STAT: simple TCGA data access for integrated statistical analysis in R.

1 reference

12 December 2020

TCGASpliceSeq a compendium of alternative mRNA splicing in cancer

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12 December 2020

Systematic pan-cancer analysis of tumour purity

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12 December 2020

TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data

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12 December 2020

CrossHub: a tool for multi-way analysis of The Cancer Genome Atlas (TCGA) in the context of gene expression regulation mechanisms

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12 December 2020

Web-TCGA: an online platform for integrated analysis of molecular cancer data sets

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12 December 2020

Facilitating a culture of responsible and effective sharing of cancer genome data

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12 December 2020

Digitally deconvolving the tumor microenvironment

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12 December 2020

Rail-RNA: scalable analysis of RNA-seq splicing and coverage

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12 December 2020

TCGA Expedition: A Data Acquisition and Management System for TCGA Data

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12 December 2020

Cytokine profiling of tumor interstitial fluid of the breast and its relationship with lymphocyte infiltration and clinicopathological characteristics

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12 December 2020

TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages

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12 December 2020

Reproducible RNA-seq analysis using recount2.

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12 December 2020

GEPIA: a web server for cancer and normal gene expression profiling and interactive analyses.

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12 December 2020

A Comprehensive Infrastructure for Big Data in Cancer Research: Accelerating Cancer Research and Precision Medicine

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12 December 2020

A Case for Data Commons: Toward Data Science as a Service

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12 December 2020

recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor

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12 December 2020

TCGA-Assembler 2: Software Pipeline for Retrieval and Processing of TCGA/CPTAC Data.

1 reference

12 December 2020

A survey and evaluation of Web-based tools/databases for variant analysis of TCGA data

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12 December 2020

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Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation.

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12 December 2020

Unifying cancer and normal RNA sequencing data from different sources.

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12 December 2020

N-glycan signatures identified in tumor interstitial fluid and serum of breast cancer patients - association with tumor biology and clinical outcome.

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12 December 2020

TSVdb: a web-tool for TCGA splicing variants analysis.

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12 December 2020

OncoLnc: linking TCGA survival data to mRNAs, miRNAs, and lncRNAs

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PCBI.1006701

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PCBI.1006701

Identifiers

DOI

10.1371/JOURNAL.PCBI.1006701

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30835723%20AND%20SRC:MED&resulttype=core&format=json

journals/ploscb/MounirLSOBCNCP19

27 April 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30835723%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

1 reference