(Q64096733)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30814501%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

title

An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30814501%20AND%20SRC:MED&resulttype=core&format=json

single cell transcriptomics

26 April 2020

main subject

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30814501%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

Tushar J Desai

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30814501%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

Oliver Eickelberg

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30814501%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

Matthias Mann

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30814501%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

Fabian J. Theis

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30814501%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

11

Monica Nagendran

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30814501%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

16

Herbert B Schiller

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30814501%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

1

Ilias Angelidis

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30814501%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

8

Meshal Ansari

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30814501%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

author name string

Isis E Fernandez

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30814501%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

Maximilian Strunz

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30814501%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

Christoph H Mayr

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30814501%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

Flavia R Greiffo

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30814501%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

George Tsitsiridis

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30814501%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

Elisabeth Graf

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30814501%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

Tim-Matthias Strom

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30814501%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

language of work or name

English

0 references

publication date

27 February 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30814501%20AND%20SRC:MED&resulttype=core&format=json

external data available at URL

26 April 2020

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE124872

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

published in

Nature Communications

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30814501%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

volume

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30814501%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30814501%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

page(s)

963

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30814501%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

26 April 2020

copyright license

start time

27 February 2019

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

lung

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

Drop-seq

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/6393476

inferred from PubMed Central ID database lookup

exact match

https://scigraph.springernature.com/pub.10.1038/s41467-019-08831-9

0 references

cites work

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1 reference

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7 January 2021

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7 January 2021

Hallmarks of the ageing lung

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7 January 2021

Aging causes a slowing in ciliary beat frequency, mediated by PKCε

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

Aging and Anatomical Variations in Lung Tissue Stiffness.

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7 January 2021

Resident cellular components of the human lung: current knowledge and goals for research on cell phenotyping and function.

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7 January 2021

Scaling single-cell genomics from phenomenology to mechanism

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7 January 2021

Exponential scaling of single-cell RNA-seq in the past decade

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7 January 2021

Mapping the Mouse Cell Atlas by Microwell-Seq

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7 January 2021

Mass-spectrometric exploration of proteome structure and function

1 reference

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7 January 2021

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

1 reference

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7 January 2021

Comparative Analysis of Single-Cell RNA Sequencing Methods.

1 reference

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7 January 2021

The lung is a site of platelet biogenesis and a reservoir for haematopoietic progenitors

1 reference

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7 January 2021

The Immunological Genome Project: networks of gene expression in immune cells.

1 reference

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7 January 2021

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1 reference

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7 January 2021

matchSCore: Matching Single-Cell Phenotypes Across Tools and Experiments

1 reference

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7 January 2021

Aging increases cell-to-cell transcriptional variability upon immune stimulation

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-08831-9

7 January 2021

Single-Cell Analysis of Human Pancreas Reveals Transcriptional Signatures of Aging and Somatic Mutation Patterns

1 reference

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7 January 2021

Causal analysis approaches in Ingenuity Pathway Analysis

1 reference

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7 January 2021

1D and 2D annotation enrichment: a statistical method integrating quantitative proteomics with complementary high-throughput data

1 reference

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7 January 2021

The instructive extracellular matrix of the lung: basic composition and alterations in chronic lung disease

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7 January 2021

The Intersection Of Aging Biology and The Pathobiology of Lung Diseases: A Joint NHLBI/NIA Workshop

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7 January 2021

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7 January 2021

Localization of a binding site for the proteoglycan decorin on collagen XIV (undulin)

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7 January 2021

Proteoglycans decorin and biglycan differentially modulate TGF-beta-mediated fibrotic responses in the lung

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7 January 2021

Negative regulation of transforming growth factor-beta by the proteoglycan decorin

1 reference

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7 January 2021

Compartment-resolved Proteomic Analysis of Mouse Aorta during Atherosclerotic Plaque Formation Reveals Osteoclast-specific Protein Expression

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-08831-9

7 January 2021

Deep Proteome Profiling Reveals Common Prevalence of MZB1-positive Plasma B Cells in Human Lung and Skin Fibrosis.

1 reference

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7 January 2021

Time- and compartment-resolved proteome profiling of the extracellular niche in lung injury and repair

1 reference

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7 January 2021

Breakdown of the reciprocal stabilization of QBRICK/Frem1, Fras1, and Frem2 at the basement membrane provokes Fraser syndrome-like defects

1 reference

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7 January 2021

Basement membrane distortions impair lung lobation and capillary organization in the mouse model for fraser syndrome

1 reference

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7 January 2021

T(H)2-mediated pulmonary inflammation leads to the differential expression of ribonuclease genes by alveolar macrophages

1 reference

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7 January 2021

A CREB-C/EBPbeta cascade induces M2 macrophage-specific gene expression and promotes muscle injury repair

1 reference

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7 January 2021

C/EBP beta gene inactivation causes both impaired and enhanced gene expression and inverse regulation of IL-12 p40 and p35 mRNAs in macrophages.

1 reference

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7 January 2021

Molecular mechanisms of IFN-gamma to up-regulate MHC class I antigen processing and presentation

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-08831-9

7 January 2021

Stearoyl-CoA desaturase-1 and adaptive stress signaling

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-08831-9

7 January 2021

Diseases of pulmonary surfactant homeostasis

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-08831-9

7 January 2021

Activation of sterol-response element-binding proteins (SREBP) in alveolar type II cells enhances lipogenesis causing pulmonary lipotoxicity

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-08831-9

7 January 2021

Simultaneous epitope and transcriptome measurement in single cells

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7 January 2021

The promise of spatial transcriptomics for neuroscience in the era of molecular cell typing.

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7 January 2021

Spatial transcriptomics: paving the way for tissue-level systems biology

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7 January 2021

Simultaneous Multiplexed Imaging of mRNA and Proteins with Subcellular Resolution in Breast Cancer Tissue Samples by Mass Cytometry.

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7 January 2021

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7 January 2021

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7 January 2021

Proteomic analysis of altered extracellular matrix turnover in bleomycin-induced pulmonary fibrosis

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7 January 2021

Molecular composition of the alveolar lining fluid in the aging lung.

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7 January 2021

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7 January 2021

Spatial reconstruction of single-cell gene expression data

1 reference

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7 January 2021

Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells

1 reference

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7 January 2021

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7 January 2021

Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells

1 reference

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7 January 2021

Deep and highly sensitive proteome coverage by LC-MS/MS without prefractionation.

1 reference

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7 January 2021

SprayQc: a real-time LC-MS/MS quality monitoring system to maximize uptime using off the shelf components

1 reference

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7 January 2021

Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer.

1 reference

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7 January 2021

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

1 reference

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7 January 2021

Andromeda: a peptide search engine integrated into the MaxQuant environment

1 reference

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7 January 2021

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

1 reference

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7 January 2021

voom: Precision weights unlock linear model analysis tools for RNA-seq read counts

1 reference

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7 January 2021

Flow cytometric analysis of macrophages and dendritic cell subsets in the mouse lung

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-08831-9

7 January 2021

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-08831-9

7 January 2021

Automated cell-type classification in intact tissues by single-cell molecular profiling.

1 reference

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7 January 2021

Pulmonary surfactant: ultrastructural features and putative mechanisms of aging

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/30814501

12 December 2020

inferred from PubMed ID database lookup

STAR: ultrafast universal RNA-seq aligner

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/30814501

12 December 2020

inferred from PubMed ID database lookup

1 reference

https://pubmed.ncbi.nlm.nih.gov/30814501

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1038/S41467-019-08831-9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30814501%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

26 April 2020

ADS bibcode

2019NatCo..10..963A

0 references

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30814501%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

PubMed publication ID

30814501

1 reference