(Q64115893)

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A Study into the ADP-Ribosylome of IFN-γ-Stimulated THP-1 Human Macrophage-like Cells Identifies ARTD8/PARP14 and ARTD9/PARP9 ADP-Ribosylation

scientific article published on 21 March 2019

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scholarly article

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28 April 2020

A Study into the ADP-Ribosylome of IFN-γ-Stimulated THP-1 Human Macrophage-like Cells Identifies ARTD8/PARP14 and ARTD9/PARP9 ADP-Ribosylation (English)

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28 April 2020

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Michael O Hottiger

5

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28 April 2020

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28 April 2020

Masanori Aikawa

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Masanori Aikawa

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28 April 2020

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Hideyuki Higashi

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28 April 2020

Takashi Maejima

2

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28 April 2020

Lang Ho Lee

3

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28 April 2020

Yukiyoshi Yamazaki

4

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28 April 2020

publication date

21 March 2019

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28 April 2020

Journal of Proteome Research

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28 April 2020

18

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28 April 2020

4

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28 April 2020

1607-1622

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Europe PubMed Central

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28 April 2020

describes a project that uses

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Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC6456868/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

1 reference

Europe PubMed Central

18 June 2022

https://europepmc.org/article/PMC/6456868

based on heuristic

inferred from PubMed Central ID database lookup

Activation of human monocyte-derived macrophages by interferon gamma is accompanied by increase of poly(ADP-ribose) polymerase activity

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Hydrogen peroxide-induced injury of cells and its prevention by inhibitors of poly(ADP-ribose) polymerase

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Tumor promoter phorbol-12-myristate-13-acetate induces poly ADP-ribosylation in human monocytes

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Studies on anti-poly(adenosine diphosphate ribose) antibody

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Enzymic adenosine diphosphate ribosylation of histone and poly adenosine diphosphate ribose synthesis in rat liver nuclei

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Splitting of the ribose-ribose linkage of poly(adenosine diphosphate-robose) by a calf thymus extract

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chemical properties of elongation factor 2. Amino acid composition, NH 2 -terminal residue, and sulfhydryl reactivity

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Monoclonal antibodies to poly(adenosine diphosphate ribose) recognize different structures

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Poly(ADP-ribose) synthetase, a main acceptor of poly(ADP-ribose) in isolated nuclei

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nicotinamide inhibits nitric oxide synthase mRNA induction in activated macrophages

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inhibition of poly(ADP-ribose) polymerase attenuates inflammation in a model of chronic colitis

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PANTHER: a library of protein families and subfamilies indexed by function

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

WebLogo: A Sequence Logo Generator

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification and characterization of a mammalian 39-kDa poly(ADP-ribose) glycohydrolase

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Poly(ADP-ribose): novel functions for an old molecule

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Use of gas-phase fractionation to increase protein identifications : application to the peroxisome

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Proteome-wide identification of poly(ADP-ribose) binding proteins and poly(ADP-ribose)-associated protein complexes

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Tandem mass spectrometry investigation of ADP-ribosylated kemptide

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PARP-14, a member of the B aggressive lymphoma family, transduces survival signals in primary B cells.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Electron transfer dissociation facilitates sequencing of adenosine diphosphate-ribosylated peptides

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Toward a unified nomenclature for mammalian ADP-ribosyltransferases.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of distinct amino acids as ADP-ribose acceptor sites by mass spectrometry

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural Basis for DNA Damage-Dependent Poly(ADP-ribosyl)ation by Human PARP-1

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Quantitative proteomics profiling of the poly(ADP-ribose)-related response to genotoxic stress

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Quantitative proteomics and dynamic imaging reveal that G3BP-mediated stress granule assembly is poly(ADP-ribose)-dependent following exposure to MNNG-induced DNA alkylation

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Toward full peptide sequence coverage by dual fragmentation combining electron-transfer and higher-energy collision dissociation tandem mass spectrometry.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Therapeutic applications of PARP inhibitors: anticancer therapy and beyond

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Macrodomain-containing proteins are new mono-ADP-ribosylhydrolases.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Deficiency of terminal ADP-ribose protein glycohydrolase TARG1/C6orf130 in neurodegenerative disease

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Macrodomain-containing proteins: regulating new intracellular functions of mono(ADP-ribosyl)ation.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Site-specific characterization of the Asp- and Glu-ADP-ribosylated proteome

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of ADP-ribosylated peptides and ADP-ribose acceptor sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phosphoproteomic approach to characterize protein mono- and poly(ADP-ribosyl)ation sites from cells.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PARP12, an interferon-stimulated gene involved in the control of protein translation and inflammation.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nuclear ADP-Ribosylation and Its Role in Chromatin Plasticity, Cell Differentiation, and Epigenetics.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Promise of Proteomics for the Study of ADP-Ribosylation

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Biology of Poly(ADP-Ribose) Polymerases: The Factotums of Cell Maintenance

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Optimization of LTQ-Orbitrap Mass Spectrometer Parameters for the Identification of ADP-Ribosylation Sites.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

2016 update of the PRIDE database and its related tools

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Proteome-wide identification of the endogenous ADP-ribosylome of mammalian cells and tissue.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Serine is a new target residue for endogenous ADP-ribosylation on histones.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PARP9 and PARP14 cross-regulate macrophage activation via STAT1 ADP-ribosylation

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Combining Higher-Energy Collision Dissociation and Electron-Transfer/Higher-Energy Collision Dissociation Fragmentation in a Product-Dependent Manner Confidently Assigns Proteomewide ADP-Ribose Acceptor Sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The conserved macrodomains of the non-structural proteins of Chikungunya virus and other pathogenic positive strand RNA viruses function as mono-ADP-ribosylhydrolases

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PARPs and ADP-ribosylation: recent advances linking molecular functions to biological outcomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

New Quantitative Mass Spectrometry Approaches Reveal Different ADP-ribosylation Phases Dependent On the Levels of Oxidative Stress.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Proteome-Wide Identification of In Vivo ADP-Ribose Acceptor Sites by Liquid Chromatography-Tandem Mass Spectrometry

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A Cell-Line-Specific Atlas of PARP-Mediated Protein Asp/Glu-ADP-Ribosylation in Breast Cancer

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Proteomic analyses identify ARH3 as a serine mono-ADP-ribosylhydrolase

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Proteomic Analysis of the Downstream Signaling Network of PARP1.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PARP14 Controls the Nuclear Accumulation of a Subset of Type I IFN–Inducible Proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

BoxCar acquisition method enables single-shot proteomics at a depth of 10,000 proteins in 100 minutes

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comprehensive ADP-ribosylome analysis identifies tyrosine as an ADP-ribose acceptor site

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Systems-wide Analysis of Serine ADP-Ribosylation Reveals Widespread Occurrence and Site-Specific Overlap with Phosphorylation

1 reference

https://pubmed.ncbi.nlm.nih.gov/30848916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1021/ACS.JPROTEOME.8B00895

1 reference

Europe PubMed Central

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28 April 2020

PMC publication ID

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30848916%20AND%20SRC:MED&resulttype=core&format=json

28 April 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30848916%20AND%20SRC:MED&resulttype=core&format=json

28 April 2020

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