(Q71144379)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8663567%20AND%20SRC:MED&resulttype=core&format=json

16 October 2019

title

The organic crystallizing agent 2-methyl-2,4-pentanediol reduces DNA curvature by means of structural changes in A-tracts (English)

1 reference

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16 October 2019

1

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16 October 2019

5

R E Harrington

0 references

author name string

K Park

series ordinal

2

1 reference

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16 October 2019

J D Griffith

series ordinal

3

1 reference

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16 October 2019

S C Harvey

series ordinal

4

1 reference

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16 October 2019

language of work or name

English

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publication date

1 July 1996

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8663567%20AND%20SRC:MED&resulttype=core&format=json

Journal of Biological Chemistry

16 October 2019

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8663567%20AND%20SRC:MED&resulttype=core&format=json

16 October 2019

volume

271

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8663567%20AND%20SRC:MED&resulttype=core&format=json

16 October 2019

issue

30

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8663567%20AND%20SRC:MED&resulttype=core&format=json

16 October 2019

page(s)

17911-17919

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8663567%20AND%20SRC:MED&resulttype=core&format=json

The pitch of chromatin DNA is reflected in its nucleotide sequence

16 October 2019

cites work

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Bent helical structure in kinetoplast DNA.

21 January 2018

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The locus of sequence-directed and protein-induced DNA bending

21 January 2018

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Sequence dependence of the curvature of DNA: a test of the phasing hypothesis

21 January 2018

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Sequence-directed curvature of DNA

21 January 2018

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Estimation of wedge components in curved DNA.

21 January 2018

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Curved DNA: design, synthesis, and circularization

21 January 2018

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A computer graphics study of sequence-directed bending in DNA

21 January 2018

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DNA bending at adenine . thymine tracts

21 January 2018

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Calibration of DNA curvature and a unified description of sequence-directed bending

21 January 2018

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Sequence periodicities in chicken nucleosome core DNA.

21 January 2018

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Guanine tracts enhance sequence directed DNA bends

21 January 2018

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Evidence for opposite groove-directed curvature of GGGCCC and AAAAA sequence elements

21 January 2018

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Validity of the nearest-neighbor approximation in the evaluation of the electrophoretic manifestations of DNA curvature

21 January 2018

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Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles

21 January 2018

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Sequence-directed curvature of DNA.

21 January 2018

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21 January 2018

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Sequence Elements Responsible for DNA Curvature

21 January 2018

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The structure of an oligo(dA).oligo(dT) tract and its biological implications

21 January 2018

1 reference

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A bifurcated hydrogen-bonded conformation in the d(A.T) base pairs of the DNA dodecamer d(CGCAAATTTGCG) and its complex with distamycin

21 January 2018

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The intrinsic curvature of DNA in solution.

21 January 2018

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Base sequence effects in double-helical DNA. III. Average properties of curved DNA

21 January 2018

1 reference

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Crystal lattice packing is important in determining the bend of a DNA dodecamer containing an adenine tract

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Crystal structure of CATGGCCATG and its implications for A-tract bending models

21 January 2018

1 reference

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The crystal structure of C-C-A-T-T-A-A-T-G-G. Implications for bending of B-DNA at T-A steps

21 January 2018

1 reference

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Bending and curvature calculations in B-DNA.

21 January 2018

1 reference

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Bending and torsional flexibility of G/C-rich sequences as determined by cyclization assays

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

What is the basis of sequence-directed curvature in DNAs containing A tracts?

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Dehydrating agents sharply reduce curvature in DNAs containing A tracts

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Physiological concentration of magnesium ions induces a strong macroscopic curvature in GGGCCC-containing DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Studies of DNA bending and flexibility using gel electrophoresis

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

DNA structural variations in the E. coli tyrT promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Sequence-dependent structural variations of DNA revealed by DNase I.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Hydroxyl radical "footprinting": high-resolution information about DNA-protein contacts and application to lambda repressor and Cro protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Chemical reactivity of potassium permanganate and diethyl pyrocarbonate with B DNA: specific reactivity with short A-tracts

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Visualization of the bent helix in kinetoplast DNA by electron microscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Phased adenine tracts in double-stranded RNA do not induce sequence-directed bending

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Electron microscope visualization of chromatin and other DNA-protein complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

The effects of sequence context on DNA curvature.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Crystallographic analysis of C-C-A-A-G-C-T-T-G-G and its implications for bending in B-DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Artificial nucleosome positioning sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

DNA flexibility variation may dominate DNase I cleavage

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

X-ray structure of the DNase I-d(GGTATACC)2 complex at 2.3 A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

DNA supercoiling promotes formation of a bent repression loop in lac DNA.

21 January 2018

1 reference

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Using hydroxyl radical to probe DNA structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Iron(II) EDTA used to measure the helical twist along any DNA molecule

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

The unusual conformation adopted by the adenine tracts in kinetoplast DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Direct evidence for DNA bending at the lambda replication origin

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

DNA bending, flexibility, and helical repeat by cyclization kinetics.

21 January 2018

1 reference

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Application of the method of phage T4 DNA ligase-catalyzed ring-closure to the study of DNA structure. I. Computational analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Determination of the extent of DNA bending by an adenine-thymine tract

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

DNA flexibility studied by covalent closure of short fragments into circles

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Detection of localized DNA flexibility

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Temperature and salt dependence of the gel migration anomaly of curved DNA fragments

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Energetics of DNA twisting. I. Relation between twist and cyclization probability.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Structural specificities of five commonly used DNA nucleases

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Structure refined to 2Å of a nicked DNA octanucleotide complex with DNase I

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

DNA bending and its relation to nucleosome positioning.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Sequence-specific positioning of core histones on an 860 base-pair DNA. Experiment and theory.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

A premelting conformational transition in poly(dA)-Poly(dT) coupled to daunomycin binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Computed alignment of dissimilar images for three-dimensional reconstructions

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Structural details of an adenine tract that does not cause DNA to bend

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

How the structure of an adenine tract depends on sequence context: a new model for the structure of TnAn DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

MPD and DNA bending in crystals and in solution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Physical studies of DNA premelting equilibria in duplexes with and without homo dA.dT tracts: correlations with DNA bending

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Regularities in formation of the spine of hydration in the DNA minor groove and its influence on the DNA structure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Anomalous structure and properties of poly (dA).poly(dT). Computer simulation of the polynucleotide structure with the spine of hydration in the minor groove

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Molecular structure of the B-DNA dodecamer d(CGCAAATTTGCG)2. An examination of propeller twist and minor-groove water structure at 2.2 A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

NMR observation of individual molecules of hydration water bound to DNA duplexes: direct evidence for a spine of hydration water present in aqueous solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Structure of a B-DNA decamer with a central T-A step: C-G-A-T-T-A-A-T-C-G

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Measurement of anomalously high hydration of (dA)n.(dT)n double helices in dilute solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Acoustical investigation of poly(dA).poly(dT), poly[d(A-T)], poly(A).poly(U) and DNA hydration in dilute aqueous solutions

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Probing the hydration of the minor groove of A.T synthetic DNA polymers by volume and heat changes

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

A spectroscopic and calorimetric study of the melting behaviors of a "bent" and a "normal" DNA duplex: [d(GA4T4C)]2 versus [d(GT4A4C)]2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Thermodynamics and premelting conformational changes of phased (dA)5 tracts.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Influence of fluctuations on DNA curvature. A comparison of flexible and static wedge models of intrinsically bent DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Static and statistical bending of DNA evaluated by Monte Carlo simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

Static contributions to the persistence length of DNA and dynamic contributions to DNA curvature

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.30.17911

21 January 2018

Identifiers

DOI

10.1074/JBC.271.30.17911

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8663567%20AND%20SRC:MED&resulttype=core&format=json

16 October 2019

1 reference