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Protein sidechain conformer prediction: a test of the energy function
scientific article published on 01 January 1998
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Europe PubMed Central
PubMed publication ID
9806937
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9806937%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 December 2019
title
Protein sidechain conformer prediction: a test of the energy function
(English)
1 reference
stated in
Europe PubMed Central
PubMed publication ID
9806937
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9806937%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 December 2019
author name string
Petrella RJ
series ordinal
1
1 reference
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Europe PubMed Central
PubMed publication ID
9806937
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9806937%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 December 2019
Lazaridis T
series ordinal
2
1 reference
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Europe PubMed Central
PubMed publication ID
9806937
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9806937%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 December 2019
Karplus M
series ordinal
3
1 reference
stated in
Europe PubMed Central
PubMed publication ID
9806937
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9806937%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 December 2019
publication date
1 January 1998
1 reference
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Europe PubMed Central
PubMed publication ID
9806937
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9806937%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 December 2019
published in
Folding & design
1 reference
stated in
Europe PubMed Central
PubMed publication ID
9806937
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9806937%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 December 2019
volume
3
1 reference
stated in
Europe PubMed Central
PubMed publication ID
9806937
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9806937%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 December 2019
issue
5
1 reference
stated in
Europe PubMed Central
PubMed publication ID
9806937
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9806937%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 December 2019
page(s)
353-377
1 reference
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Europe PubMed Central
PubMed publication ID
9806937
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9806937%20AND%20SRC:MED&resulttype=core&format=json
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6 December 2019
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A new approach to the rapid determination of protein side chain conformations
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Rebuilding flavodoxin from C alpha coordinates: a test study
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Construction of side-chains in homology modelling. Application to the C-terminal lobe of rhizopuspepsin
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Accurate modeling of protein conformation by automatic segment matching
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Backbone-dependent rotamer library for proteins. Application to side-chain prediction
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A method to configure protein side-chains from the main-chain trace in homology modelling
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Prediction of protein side-chain conformations from local three-dimensional homology relationships
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Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: a new homology modeling tool
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Modeling side-chain conformation for homologous proteins using an energy-based rotamer search
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Studies by 1H nuclear magnetic resonance and distance geometry of the solution conformation of the alpha-amylase inhibitor tendamistat
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Rotamers: to be or not to be? An analysis of amino acid side-chain conformations in globular proteins.
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Sidechain torsional potentials and motion of amino acids in porteins: bovine pancreatic trypsin inhibitor
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Conformation of amino acid side-chains in proteins
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An analysis of side-chain conformation in proteins
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Conformational analysis of the backbone-dependent rotamer preferences of protein sidechains
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Effect of anisotropy and anharmonicity on protein crystallographic refinement. An evaluation by molecular dynamics
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Comparison of two highly refined structures of bovine pancreatic trypsin inhibitor
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Comparison of conformational characteristics in structurally similar protein pairs
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Homology modelling of annexin I: implicit solvation improves side-chain prediction and combination of evaluation criteria allows recognition of different types of conformational error
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Analysis of the relationship between side-chain conformation and secondary structure in globular proteins
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Variability in the tertiary structure of α-chymotrypsin at 2.8-Å resolution
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A structure-factor least-squares refinement procedure for macromolecular structures using constrainedandrestrained parameters
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Polar hydrogen positions in proteins: Empirical energy placement and neutron diffraction comparison
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Errors in three dimensions
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Structure of bovine pancreatic trypsin inhibitor. Results of joint neutron and X-ray refinement of crystal form II
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Structure of phage 434 Cro protein at 2.35 A resolution
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Structure of the C-terminal domain of the ribosomal protein L7/L12 from Escherichia coli at 1.7 A
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Structure of the semiquinone form of flavodoxin from Clostridum MP. Extension of 1.8 A resolution and some comparisons with the oxidized state
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Crystal structure of a complex of HIV‐1 protease with a dihydroxyethylene‐containing inhibitor: Comparisons with molecular modeling
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Refinement of human lysozyme at 1.5 Å resolution analysis of non-bonded and hydrogen-bond interactions
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Structure and refinement of penicillopepsin at 1.8 Å resolution
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Structure of thermolysin refined at 1.6 A resolution
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Identifiers
DOI
10.1016/S1359-0278(98)00050-9
1 reference
stated in
Europe PubMed Central
PubMed publication ID
9806937
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9806937%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 December 2019
PubMed publication ID
9806937
1 reference
stated in
Europe PubMed Central
PubMed publication ID
9806937
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9806937%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 December 2019
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