(Q77732633)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11880171%20AND%20SRC:MED&resulttype=core&format=json

7 December 2019

title

From the sequence to the superstructural properties of DNAs (English)

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7 December 2019

1

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7 December 2019

author name string

P De Santis

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11880171%20AND%20SRC:MED&resulttype=core&format=json

7 December 2019

R Paparcone

3

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11880171%20AND%20SRC:MED&resulttype=core&format=json

7 December 2019

M Savino

4

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11880171%20AND%20SRC:MED&resulttype=core&format=json

7 December 2019

A Scipioni

5

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11880171%20AND%20SRC:MED&resulttype=core&format=json

7 December 2019

publication date

1 January 2002

1 reference

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7 December 2019

published in

Biophysical Chemistry

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11880171%20AND%20SRC:MED&resulttype=core&format=json

7 December 2019

volume

95

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11880171%20AND%20SRC:MED&resulttype=core&format=json

7 December 2019

issue

1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11880171%20AND%20SRC:MED&resulttype=core&format=json

7 December 2019

page(s)

23-47

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11880171%20AND%20SRC:MED&resulttype=core&format=json

A theoretical model of DNA curvature.

7 December 2019

cites work

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7 January 2021

Bent helical structure in kinetoplast DNA.

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7 January 2021

The locus of sequence-directed and protein-induced DNA bending

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7 January 2021

DNA bending at adenine . thymine tracts

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7 January 2021

Sequence dependence of the curvature of DNA: a test of the phasing hypothesis

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7 January 2021

Sequence-directed curvature of DNA

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7 January 2021

Calibration of DNA curvature and a unified description of sequence-directed bending

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7 January 2021

Sequence-dependent deformational anisotropy of chromatin DNA.

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7 January 2021

Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles

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7 January 2021

Reptation of a Polymer Chain in the Presence of Fixed Obstacles

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7 January 2021

Theory of gel electrophoresis of DNA.

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7 January 2021

Static contributions to the persistence length of DNA and dynamic contributions to DNA curvature

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7 January 2021

Understanding the anomalous electrophoresis of bent DNA molecules: a reptation model

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7 January 2021

Saturation mutagenesis of a DNA region of bend. Base steps other than ApA influence the bend

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7 January 2021

Anomalous rapid electrophoretic mobility of DNA containing triplet repeats associated with human disease genes.

1 reference

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7 January 2021

CTG repeats associated with human genetic disease are inherently flexible

1 reference

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7 January 2021

DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

1 reference

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7 January 2021

Influence of fluctuations on DNA curvature. A comparison of flexible and static wedge models of intrinsically bent DNA.

1 reference

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7 January 2021

Dual role of DNA intrinsic curvature and flexibility in determining nucleosome stability

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

A theoretical model for the prediction of sequence-dependent nucleosome thermodynamic stability

1 reference

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7 January 2021

Mapping the intrinsic curvature and flexibility along the DNA chain.

1 reference

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7 January 2021

An optimized potential function for the calculation of nucleic acid interaction energies I. base stacking

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7 January 2021

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

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7 January 2021

Elastic model of supercoiling

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7 January 2021

Catastrophic variation of twist and writhing of circular DNAs with constraint?

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Twist and writhing in short circular DNAs according to first-order elasticity.

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Statistical mechanics of DNA topoisomers. The helical worm-like chain.

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Topological distributions and the torsional rigidity of DNA. A Monte Carlo study of DNA circles.

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Simulating DNA at low resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

On higher buckling transitions in supercoiled DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Twist and writhe of a DNA loop containing intrinsic bends

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Thermodynamics of the first transition in writhe of a small circular DNA by Monte Carlo simulation.

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

The writhing number of a space curve

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Thermodynamic and kinetic studies on the interconversion between the linear and circular forms of phage lambda DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

On the probability of ring closure of lambda DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Röntgenuntersuchung gelöster Fadenmoleküle

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Ring closure probabilities for DNA fragments by Monte Carlo simulation.

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Measurement of the DNA bend angle induced by the catabolite activator protein using Monte Carlo simulation of cyclization kinetics

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Characterization of the ATF/CREB site and its complex with GCN4.

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Global structure and mechanical properties of a 10-bp nucleosome positioning motif

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

DNA flexibility studied by covalent closure of short fragments into circles

1 reference

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7 January 2021

Energetics of DNA twisting. I. Relation between twist and cyclization probability.

1 reference

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7 January 2021

Protein-induced bending and DNA cyclization

1 reference

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7 January 2021

Fos and Jun do not bend the AP-1 recognition site

1 reference

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7 January 2021

Crystal structure of a CAP-DNA complex: the DNA is bent by 90 degrees

1 reference

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7 January 2021

Structure of Chromatin

1 reference

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7 January 2021

A low resolution structure for the histone core of the nucleosome

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Structure of the nucleosome core particle at 7 Å resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Crystal structure of the nucleosome core particle at 2.8 A resolution

1 reference

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7 January 2021

Artificial nucleosome positioning sequences

1 reference

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7 January 2021

Effects of DNA sequence and histone-histone interactions on nucleosome placement

1 reference

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7 January 2021

Nucleosome assembly on CTG triplet repeats

1 reference

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7 January 2021

Nucleosome assembly on methylated CGG triplet repeats in the fragile X mental retardation gene 1 promoter.

1 reference

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7 January 2021

Long CCG triplet repeat blocks exclude nucleosomes: a possible mechanism for the nature of fragile sites in chromosomes

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

The [(G/C)3NN]n motif: a common DNA repeat that excludes nucleosomes

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Identification and characterization of genomic nucleosome-positioning sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

In vitro low propensity to form nucleosomes of four telomeric sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Nucleosome assembly on telomeric sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

DNA superstructural features and nucleosomal organization of the two centromeres of Kluyveromyces lactis chromosome 1 and Saccharomyces cerevisiae chromosome 6.

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

TGGA repeats impair nucleosome formation.

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Curved DNA fragments display retarded elution upon anion exchange HPLC

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

The B-DNA dodecamer at high resolution reveals a spine of water on sodium

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Structure of the potassium form of CGCGAATTCGCG: DNA deformation by electrostatic collapse around inorganic cations

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

An analysis of the relationship between hydration and protein-DNA interactions

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

DNA structure: cations in charge?

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Localization of ammonium ions in the minor groove of DNA duplexes in solution and the origin of DNA A-tract bending

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Structure of a B-DNA dodecamer. III. Geometry of hydration

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Static curvature and flexibility measurements of DNA with microscopy. A simple renormalization method, its assessment by experiment and simulation

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Determination of DNA persistence length by cryo-electron microscopy. Separation of the static and dynamic contributions to the apparent persistence length of DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

A useful role for "static" models in elucidating the behaviour of DNA in solution

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Polymer chain statistics and conformational analysis of DNA molecules with bends or sections of different flexibility

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Localized DNA flexibility contributes to target site selection by DNA-bending proteins.

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Detection of localized DNA flexibility

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

DNA bending by asymmetric phosphate neutralization

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Conformational analysis of a 139 base-pair DNA fragment containing a single-stranded break and its interaction with human poly(ADP-ribose) polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Structural analysis of DNA bending induced by tethered triple helix forming oligonucleotides

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Scanning force microscopy of DNA deposited onto mica: equilibration versus kinetic trapping studied by statistical polymer chain analysis.

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Visualizing protein-nucleic acid interactions on a large scale with the scanning force microscope

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

Biochemical and structural applications of scanning force microscopy

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2801%2900246-0

7 January 2021

10.1016/S0301-4622(01)00246-0

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11880171%20AND%20SRC:MED&resulttype=core&format=json

7 December 2019

1 reference