(Q80356801)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17512758%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

title

The relative performance of indel-coding methods in simulations (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17512758%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

author name string

Mark P Simmons

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17512758%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

Kai Müller

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17512758%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

Andrew P Norton

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17512758%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

publication date

13 April 2007

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17512758%20AND%20SRC:MED&resulttype=core&format=json

Molecular Phylogenetics and Evolution

30 December 2019

number of pages

17

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17512758%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

volume

44

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17512758%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

issue

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17512758%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

page(s)

724-740

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17512758%20AND%20SRC:MED&resulttype=core&format=json

The potential value of indels as phylogenetic markers: position of trichomonads as a case study

30 December 2019

cites work

1 reference

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A Phylogenetic Analysis of Epilobium (Onagraceae) Based on Nuclear Ribosomal DNA Sequences

7 January 2021

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Biogeography and floral evolution of baobabs (Adansonia, Bombacaceae) as inferred from multiple data sets

7 January 2021

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Molecular phylogeny supports the morphologically based taxonomic transfer of the "medicagoid" Trigonella species to the genus Medicago L

7 January 2021

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Evolution of annual species of the genus Medicago: a molecular phylogenetic approach.

7 January 2021

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Majority of divergence between closely related DNA samples is due to indels

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

Empirical analysis of protein insertions and deletions determining parameters for the correct placement of gaps in protein sequence alignments

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

Indels in protein-coding sequences of Euarchontoglires constrain the rooting of the eutherian tree

7 January 2021

1 reference

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Confidence Limits on Phylogenies: an Approach using the Bootstrap

7 January 2021

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Progressive sequence alignment as a prerequisite to correct phylogenetic trees

7 January 2021

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Stretch coding and block coding: two new strategies to represent questionably aligned DNA sequences

7 January 2021

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7 January 2021

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Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms

7 January 2021

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The size distribution of insertions and deletions in human and rodent pseudogenes suggests the logarithmic gap penalty for sequence alignment

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

The branching order and phylogenetic placement of species from completed bacterial genomes, based on conserved indels found in various proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

Patterns and relative rates of nucleotide and insertion/deletion evolution at six chloroplast intergenic regions in new world species of the Lecythidaceae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

Phylogeny and comparative substitution rates of frogs inferred from sequences of three nuclear genes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

Molecular evolution of insertions and deletion in the chloroplast genome of silene

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

Evolution and phylogenetic utility of alignment gaps within intron sequences of three nuclear genes in bumble bees (Bombus).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

Lateral transfer at the gene and subgenic levels in the evolution of eukaryotic enolase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

Complete Chloroplast Genome Sequences from Korean Ginseng (Panax schinseng Nees) and Comparative Analysis of Sequence Evolution among 17 Vascular Plants

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

Improving phylogenetic inference of mushrooms with RPB1 and RPB2 nucleotide sequences (Inocybe; Agaricales)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

Models of sequence evolution for DNA sequences containing gaps

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

New approach to an old problem: Incorporating signal from gap-rich regions of ITS and rDNA large subunit into phylogenetic analyses to resolve the Peltigera canina species complex

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

An initial map of insertion and deletion (INDEL) variation in the human genome.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

Incorporating information from length-mutational events into phylogenetic analysis.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

Hydrophobicity and phylogeny

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

How should gaps be treated in parsimony? A comparison of approaches using simulation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

Distribution of Indel lengths

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

Coding of insertion-deletion events of the chloroplastic intergene atp beta-rbcL for the phylogeny of the Valerianeae tribe (Valerianaceae).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

Phylogeny and historical biogeography of Agabinae diving beetles (Coleoptera) inferred from mitochondrial DNA sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

Comprehensive comparative analysis of kinesins in photosynthetic eukaryotes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

Molecular phylogeny of the fern genus Elaphoglossum (Elaphoglossaceae) based on chloroplast non-coding DNA sequences: contributions of species from the Indian Ocean area

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

The effects of increasing genetic distance on alignment of, and tree construction from, rDNA internal transcribed spacer sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

Efficiently resolving the basal clades of a phylogenetic tree using Bayesian and parsimony approaches: a case study using mitogenomic data from 100 higher teleost fishes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

Incorporation, relative homoplasy, and effect of gap characters in sequence-based phylogenetic analyses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

Evolution of GCYC, a Gesneriaceae homolog of CYCLOIDEA, within Gesnerioideae (Gesneriaceae).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

Rose: generating sequence families.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

Occurrence and consequences of coding sequence insertions and deletions in Mammalian genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

An evolutionary model for maximum likelihood alignment of DNA sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

Inching toward reality: an improved likelihood model of sequence evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

OPTIMIZATION ALIGNMENT: THE END OF MULTIPLE SEQUENCE ALIGNMENT IN PHYLOGENETICS?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

Does adding characters with missing data increase or decrease phylogenetic accuracy?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

Missing data, incomplete taxa, and phylogenetic accuracy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

GapCoder automates the use of indel characters in phylogenetic analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.04.001

10.1016/J.YMPEV.2007.04.001

7 January 2021

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17512758%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

1 reference