(Q81546617)

English

Inferring the pattern of spontaneous mutation from the pattern of substitution in unitary pseudogenes of Mycobacterium leprae and a comparison of mutation patterns among distantly related organisms

scientific article published on 02 November 2005

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scholarly article

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Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16315108%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

Inferring the pattern of spontaneous mutation from the pattern of substitution in unitary pseudogenes of Mycobacterium leprae and a comparison of mutation patterns among distantly related organisms (English)

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16315108%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

Mycobacterium leprae

object named as

Mycobacterium leprae

1 reference

based on heuristic

inferred from title

1

1 reference

Europe PubMed Central

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9 January 2020

author name string

Dan Graur

2

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9 January 2020

publication date

2 November 2005

1 reference

Europe PubMed Central

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9 January 2020

Journal of Molecular Evolution

1 reference

Europe PubMed Central

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9 January 2020

61

1 reference

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9 January 2020

6

1 reference

Europe PubMed Central

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9 January 2020

795-803

1 reference

Europe PubMed Central

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9 January 2020

https://scigraph.springernature.com/pub.10.1007/s00239-004-0235-0

0 references

Ongoing evolution of strand composition in bacterial genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Relationships between genomic G+C content, RNA secondary structures, and optimal growth temperature in prokaryotes

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nonrandomness of point mutation as reflected in nucleotide substitutions in pseudogenes and its evolutionary implications

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Organization of the origins of replication of the chromosomes of Mycobacterium smegmatis, Mycobacterium leprae and Mycobacterium tuberculosis and isolation of a functional origin from M. smegmatis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Biases of the estimates of DNA divergence obtained by the restriction enzyme technique

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Problems with Parsimony in Sequences of Biased Base Composition

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome degradation is an ongoing process in Rickettsia

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Replication of animal mitochondrial DNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Strand symmetry of mutation rates in theβ-globin region

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Strand asymmetry in human mitochondrial DNA mutations

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Universal replication biases in bacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Massive gene decay in the leprosy bacillus

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

GC-content evolution in mammalian genomes: the biased gene conversion hypothesis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comprehensive analysis of pseudogenes in prokaryotes: widespread gene decay and failure of putative horizontally transferred genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Oriloc: prediction of replication boundaries in unannotated bacterial chromosomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chromosomal location and evolutionary rate variation in enterobacterial genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Relative roles of primary sequence and (G + C)% in determining the hierarchy of frequencies of complementary trinucleotide pairs in DNAs of different species

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Basic local alignment search tool

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Patterns of nucleotide substitution in pseudogenes and functional genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene location and bacterial sequence divergence

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Where are the pseudogenes in bacterial genomes?

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A chloroplast DNA mutational hotspot and gene conversion in a noncoding region near rbcL in the grass family (Poaceae).

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Oxidized, deaminated cytosines are a source of C --> T transitions in vivo

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Neutral mutations and neutral substitutions in bacterial genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Intrastrand parity rules of DNA base composition and usage biases of synonymous codons.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Instability and decay of the primary structure of DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Asymmetric substitution patterns in the two DNA strands of bacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA Methylation and Gene Function

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene expression, amino acid conservation, and hydrophobicity are the main factors shaping codon preferences in Mycobacterium tuberculosis and Mycobacterium leprae

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Patterns of nucleotide substitution in Drosophila and mammalian genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Asymmetries generated by transcription-coupled repair in enterobacterial genes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Universal trees based on large combined protein sequence data sets.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16315108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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