(Q84865221)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19897384%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

title

A role for the MS analysis of nucleic acids in the post-genomics age (English)

1 reference

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12 February 2020

0 references

Daniele Fabris

1

1 reference

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12 February 2020

publication date

17 September 2009

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19897384%20AND%20SRC:MED&resulttype=core&format=json

Journal of the American Society for Mass Spectrometry

12 February 2020

published in

1 reference

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12 February 2020

volume

21

1 reference

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12 February 2020

issue

1

1 reference

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12 February 2020

page(s)

1-13

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Mechanism of Alkylation of Nucleic Acids by Nitrosodimethylamine

12 February 2020

cites work

1 reference

12 December 2020

Studies of non-covalent interactions of actinomycin D with single-stranded oligodeoxynucleotides by ion spray mass spectrometry and tandem mass spectrometry

1 reference

12 December 2020

Ultrafast sequencing of oligodeoxyribonucleotides by FAB-mass spectrometry.

1 reference

12 December 2020

DNA sequencing by mass spectrometry

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12 December 2020

Indirect mass spectrometric methods for characterizing and sequencing oligonucleotides

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12 December 2020

Measuring dissociation constants of RNA and aminoglycoside antibiotics by electrospray ionization mass spectrometry

1 reference

12 December 2020

Interpretation of oligonucleotide mass spectra for determination of sequence using electrospray ionization and tandem mass spectrometry.

1 reference

12 December 2020

Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression

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12 December 2020

Analysis of protein-nucleic acid interactions by photochemical cross-linking and mass spectrometry

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12 December 2020

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

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12 December 2020

Analysis of enzymatic DNA sequencing reactions by matrix‐assisted laser desorption/ionization time‐of‐flight mass spectrometry

1 reference

12 December 2020

Structure-retention relationships in the gas chromatography of nucleosides

1 reference

12 December 2020

Recent developments in mass spectrometry for the characterization of nucleosides, nucleotides, oligonucleotides, and nucleic acids

1 reference

12 December 2020

HMDB: the Human Metabolome Database

1 reference

12 December 2020

Additives for the stabilization of double-stranded DNA in UV-MALDI MS.

1 reference

12 December 2020

Combinatorial epigenetics, "junk DNA", and the evolution of complex organisms

1 reference

12 December 2020

Mass spectrometry of nucleic acids

1 reference

12 December 2020

The future of DNA sequencing

1 reference

12 December 2020

Direct measurement of oligonucleotide binding stoichiometry of gene V protein by mass spectrometry.

1 reference

12 December 2020

Electrospray ionization mass spectrometry of oligonucleotide complexes with drugs, metals, and proteins.

1 reference

12 December 2020

Studying noncovalent protein complexes by electrospray ionization mass spectrometry

1 reference

12 December 2020

Characterization of transcription factors by mass spectrometry and the role of SELDI-MS.

1 reference

12 December 2020

Forkhead transcription factors, Fkh1p and Fkh2p, collaborate with Mcm1p to control transcription required for M-phase

1 reference

12 December 2020

Detection of 500-nucleotide DNA by laser desorption mass spectrometry

1 reference

12 December 2020

Analysis of noncovalent complexes of DNA and RNA by mass spectrometry

1 reference

12 December 2020

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

1 reference

12 December 2020

An NMR study of the exchange rates for protons involved in the secondary and tertiary structure of yeast tRNAphe

1 reference

12 December 2020

Analysis of double-stranded polymerase chain reaction products from the Bacillus cereus group by electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry

1 reference

12 December 2020

Triplex and quadruplex DNA structures studied by electrospray mass spectrometry.

1 reference

12 December 2020

Direct observation of UV-crosslinked protein-nucleic acid complexes by matrix-assisted laser desorption ionization mass spectrometry.

1 reference

12 December 2020

A novel strategy for the identification of protein-DNA contacts by photocrosslinking and mass spectrometry

1 reference

12 December 2020

Contributions of mass spectrometry in the study of nucleic acid-binding proteins and of nucleic acid-protein interactions

1 reference

12 December 2020

New bioinformatics resources for metabolomics.

1 reference

12 December 2020

Selfish genes, the phenotype paradigm and genome evolution

1 reference

12 December 2020

Finishing the euchromatic sequence of the human genome

1 reference

12 December 2020

Positive ion electrospray ionization mass spectrometry of double-stranded DNA/drug complexes

1 reference

12 December 2020

Capillary gel electrophoresis for rapid, high resolution DNA sequencing

1 reference

12 December 2020

Detection of double-stranded DNA by IR- and UV-MALDI mass spectrometry

1 reference

12 December 2020

Summary: the modified nucleosides of RNA.

1 reference

12 December 2020

Determinants of aminoglycoside-binding specificity for rRNA by using mass spectrometry

1 reference

12 December 2020

DNA Hairpin, Pseudoknot, and Cruciform Stability in a Solvent-Free Environment

1 reference

12 December 2020

Noncovalent probes for the investigation of structure and dynamics of protein-nucleic acid assemblies: the case of NC-mediated dimerization of genomic RNA in HIV-1

1 reference

12 December 2020

Raising the estimate of functional human sequences

1 reference

12 December 2020

Characterization of oligodeoxynucleotides by electron detachment dissociation fourier transform ion cyclotron resonance mass spectrometry.

1 reference

12 December 2020

Single-nucleotide polymorphism identification assays using a thermostable DNA polymerase and delayed extraction MALDI-TOF mass spectrometry

1 reference

12 December 2020

RNA-RNA noncovalent interactions investigated by microspray ionization mass spectrometry

1 reference

12 December 2020

Strong anion exchange for studying protein-DNA interactions by H/D exchange mass spectrometry

1 reference

12 December 2020

Non-covalent complexes between DNA-binding drugs and double-stranded deoxyoligonucleotides: a study by ionspray mass spectrometry

1 reference

12 December 2020

Gas-phase stability of double-stranded oligodeoxynucleotides and their noncovalent complexes with DNA-binding drugs as revealed by collisional activation in an ion trap

1 reference

12 December 2020

Like polarity ion/ion reactions enable the investigation of specific metal interactions in nucleic acids and their noncovalent assemblies

1 reference

12 December 2020

Investigation of quadruplex oligonucleotide-drug interactions by electrospray ionization mass spectrometry.

1 reference

12 December 2020

Determination of affinity, stoichiometry and sequence selectivity of minor groove binder complexes with double-stranded oligodeoxynucleotides by electrospray ionization mass spectrometry

1 reference

12 December 2020

Fewer Genes, More Noncoding RNA

1 reference

12 December 2020

A microfabricated dialysis device for sample cleanup in electrospray ionization mass spectrometry.

1 reference

12 December 2020

Nucleic Acid analysis by fourier transform ion cyclotron resonance mass spectrometry at the beginning of the twenty-first century

1 reference

12 December 2020

HIV-1 Tat peptide binding to TAR RNA by electrospray ionization mass spectrometry

1 reference

12 December 2020

High throughput screening of library compounds against an oligonucleotide substructure of an RNA target

1 reference

12 December 2020

Probing RegA/RNA interactions using electrospray ionization-fourier transform ion cyclotron resonance-mass spectrometry.

1 reference

12 December 2020

The riboswitch control of bacterial metabolism

1 reference

12 December 2020

Structural probing of the HIV-1 polypurine tract RNA:DNA hybrid using classic nucleic acid ligands

1 reference

12 December 2020

Experimental approaches to identify non-coding RNAs

1 reference

12 December 2020

Characterization of novel SF3b and 17S U2 snRNP proteins, including a human Prp5p homologue and an SF3b DEAD-box protein

1 reference

12 December 2020

Observation of daunomycin and nogalamycin complexes with duplex DNA using electrospray ionisation mass spectrometry

1 reference

12 December 2020

A strategy for rapid and efficient DNA sequencing by mass spectrometry

1 reference

12 December 2020

Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry

1 reference

12 December 2020

Interaction between antitumor drugs and a double-stranded oligonucleotide studied by electrospray ionization mass spectrometry

1 reference

12 December 2020

Verification of 50- to 100-mer DNA and RNA sequences with high-resolution mass spectrometry

1 reference

12 December 2020

Dissociation of intact Escherichia coli ribosomes in a mass spectrometer. Evidence for conformational change in a ribosome elongation factor G complex.

1 reference

12 December 2020

Inhibitory effects of archetypical nucleic acid ligands on the interactions of HIV-1 nucleocapsid protein with elements of Psi-RNA.

1 reference

12 December 2020

Gas phase thermal denaturation of an oligonucleotide duplex and its complexes with minor groove binders

1 reference

12 December 2020

Untying the FIV frameshifting pseudoknot structure by MS3D.

1 reference

12 December 2020

Selfish DNA: the ultimate parasite

1 reference

12 December 2020

Genetic control by a metabolite binding mRNA

1 reference

12 December 2020

The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14

1 reference

12 December 2020

The RNA modification database

1 reference

12 December 2020

Top-down characterization of nucleic acids modified by structural probes using high-resolution tandem mass spectrometry and automated data interpretation

1 reference

12 December 2020

Analysis of transcription complexes and effects of ligands by microelectrospray ionization mass spectrometry

1 reference

12 December 2020

Matrix‐assisted laser desorption/ionization mass spectrometry of nucleic acids with wavelengths in the ultraviolet and infrared

1 reference

12 December 2020

A mass spectrometric approach to the study of DNA-binding proteins: interaction of human TRF2 with telomeric DNA.

1 reference

12 December 2020

Comparison between solution-phase stability and gas-phase kinetic stability of oligodeoxynucleotide duplexes.

1 reference

12 December 2020

Toward building a database of bifunctional probes for the MS3D investigation of nucleic acids structures

1 reference

12 December 2020

Mass spectrometry of nucleic acid components. Trimethylsilyl derivatives of nucleotides

1 reference

12 December 2020

Precise determination of RNA-protein contact sites in the 50 S ribosomal subunit of Escherichia coli

1 reference

12 December 2020

High speed DNA sequencing by capillary electrophoresis

1 reference

12 December 2020

Multiple endonucleases improve MALDI-MS signature digestion product detection of bacterial transfer RNAs

1 reference

12 December 2020

Mass Spectrometric Characterization of Sequence-Specific Complexes of DNA and Transcription Factor PU.1 DNA Binding Domain

1 reference

12 December 2020

Discovery of selective, small-molecule inhibitors of RNA complexes--I. The Tat protein/TAR RNA complexes required for HIV-1 transcription

1 reference

12 December 2020

Tandem mass spectrometry for the determination of the sites of DNA interstrand cross-link

1 reference

12 December 2020

1 reference

12 December 2020

The Human Genome Program at the National Institutes of Health

1 reference

12 December 2020

Charge-state reduction with improved signal intensity of oligonucleotides in electrospray ionization mass spectrometry

1 reference

12 December 2020

Detection of oligonucleotide gas-phase conformers: H/D exchange and ion mobility as complementary techniques

1 reference

12 December 2020

MicroRNAs: genomics, biogenesis, mechanism, and function

1 reference

12 December 2020

Matrix assisted laser desorption/ionization mass spectrometry of enzymatically synthesized RNA up to 150 kDa

1 reference

12 December 2020

Genotyping single nucleotide polymorphisms by mass spectrometry.

1 reference

12 December 2020

Analysis of double-stranded oligonucleotides by electrospray mass spectrometry

1 reference

12 December 2020

Understanding the isomerization of the HIV-1 dimerization initiation domain by the nucleocapsid protein

1 reference

12 December 2020

Activation energies for dissociation of double strand oligonucleotide anions: evidence for watson-crick base pairing in vacuo

1 reference

12 December 2020

Quantitation of ribonucleic acids using 18O labeling and mass spectrometry

1 reference

12 December 2020

Mechanisms and uses of hydrogen exchange

1 reference

12 December 2020

Comparison of the collision-induced dissociation of duplex DNA at different collision regimes: evidence for a multistep dissociation mechanism.

1 reference

12 December 2020

Characterization of peptide-oligonucleotide heteroconjugates by mass spectrometry

1 reference

12 December 2020

The RNA modification database--1998.

1 reference

12 December 2020

A new strategy for genome sequencing

1 reference

12 December 2020

Toward multiplexing the application of solvent accessibility probes for the investigation of RNA three-dimensional structures by electrospray ionization-Fourier transform mass spectrometry

1 reference

12 December 2020

Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans

1 reference

12 December 2020

Rapid identification and strain-typing of respiratory pathogens for epidemic surveillance

1 reference

12 December 2020

Identification of apolipoprotein E polymorphisms using temperature cycled primer oligo base extension and mass spectrometry.

1 reference

12 December 2020

Mass spectrometry-based detection of transfer RNAs by their signature endonuclease digestion products

1 reference

12 December 2020

On-Line Microdialysis Sample Cleanup for Electrospray Ionization Mass Spectrometry of Nucleic Acid Samples

1 reference

12 December 2020

Analysis of DNA adducts by capillary methods coupled to mass spectrometry: a perspective

1 reference

12 December 2020

Direct probing of RNA structures and RNA-protein interactions in the HIV-1 packaging signal by chemical modification and electrospray ionization fourier transform mass spectrometry

1 reference

12 December 2020

Switching from repression to activation: microRNAs can up-regulate translation

1 reference

12 December 2020

Linking genome and proteome by mass spectrometry: large-scale identification of yeast proteins from two dimensional gels

1 reference

12 December 2020

Analysis of nucleic acids by FTICR MS.

1 reference

12 December 2020

Mass spectrometry-based proteomics

1 reference

12 December 2020

6-Aza-2-thiothymine: a matrix for MALDI spectra of oligonucleotides

1 reference

12 December 2020

Matrix-assisted laser desorption ionization time-of-flight mass spectrometry: a powerful tool for the mass and sequence analysis of natural and modified oligonucleotides

1 reference

12 December 2020

Oligonucleotide sequence and composition determined by matrix-assisted laser desorption/ionization

1 reference

12 December 2020

Detection and selective dissociation of intact ribosomes in a mass spectrometer

1 reference

12 December 2020

The Sequence of the Human Genome

1 reference

12 December 2020

Precise mass measurement of a double-stranded 500 base-pair (309 kDa) polymerase chain reaction product by negative ion electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry

1 reference

12 December 2020

Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases

1 reference

12 December 2020

Locating nucleobase lesions within DNA sequences by MALDI-TOF mass spectral analysis of exonuclease ladders.

1 reference

12 December 2020

Sm protein-Sm site RNA interactions within the inner ring of the spliceosomal snRNP core structure

1 reference

12 December 2020

Fast atom bombardment combined with tandem mass spectrometry for determining structures of small oligonucleotides

1 reference

12 December 2020

Mass spectrometry of nucleic acid components. Trimethylsilyl derivatives of nucleotides, nucleosides, and bases

1 reference

12 December 2020

Evaluation of complexation of metal-mediated DNA-binding drugs to oligonucleotides via electrospray ionization mass spectrometry

1 reference

12 December 2020

Gas phase RNA and DNA ions 2. Conformational dependence of the gas-phase H/D exchange of nucleotide-5'-monophosphates

1 reference

12 December 2020

Liquid chromatography-electrospray ionization-mass spectrometry: the future of DNA adduct detection

1 reference

12 December 2020

METLIN: a metabolite mass spectral database

1 reference

12 December 2020

Large-scale and automated DNA sequence determination

1 reference

12 December 2020

Direct mass spectrometric determination of the stoichiometry and binding affinity of the complexes between nucleocapsid protein and RNA stem-loop hairpins of the HIV-1 Psi-recognition element

1 reference

12 December 2020

GMD@CSB.DB: the Golm Metabolome Database

1 reference

12 December 2020

Protein-nucleic acid interactions and the expanding role of mass spectrometry

1 reference

12 December 2020

Mapping noncovalent ligand binding to stemloop domains of the HIV-1 packaging signal by tandem mass spectrometry.

1 reference

12 December 2020

Characterization of oligonucleotides and nucleic acids by mass spectrometry

1 reference

12 December 2020

Use of electrospray ionization mass spectrometry to study binding interactions between a replication terminator protein and DNA

1 reference

12 December 2020

Identification of the proteins of the yeast U1 small nuclear ribonucleoprotein complex by mass spectrometry

1 reference

12 December 2020

Molecular characterization of a tetramolecular complex between dsDNA and a DNA-binding leucine zipper peptide dimer by mass spectrometry

1 reference

12 December 2020

Enhanced gas-phase hydrogen-deuterium exchange of oligonucleotide and protein ions stored in an external multipole ion reservoir

1 reference

12 December 2020

Identification of Nucleosides in Hydrolysates of Transfer RNA by High-Resolution Mass Spectrometry

1 reference

12 December 2020

A new H/D exchange- and mass spectrometry-based method for thermodynamic analysis of protein-DNA interactions

1 reference

12 December 2020

Evaluation of binding of perylene diimide and benzannulated perylene diimide ligands to DNA by electrospray ionization mass spectrometry.

1 reference

12 December 2020

Multiplexed screening of neutral mass-tagged RNA targets against ligand libraries with electrospray ionization FTICR MS: a paradigm for high-throughput affinity screening

1 reference

12 December 2020

Riboswitches: small-molecule recognition by gene regulatory RNAs

1 reference

12 December 2020

Molecular mass measurement of intact ribonucleic acids via electrospray ionization quadrupole mass spectrometry

1 reference

12 December 2020

Characterization of nucleic acid higher order structure by gas-phase H/D exchange in a quadrupole-FT-ICR mass spectrometer

1 reference

12 December 2020

Study of a noncovalent trp repressor: DNA operator complex by electrospray ionization time-of-flight mass spectrometry

1 reference

12 December 2020

Direct observation of a DNA quadruplex by electrospray ionization mass spectrometry.

1 reference

12 December 2020

Accumulation and storage of ionized duplex DNA molecules in a quadrupole ion trap

1 reference

12 December 2020

The detection of intact double-stranded DNA by MALDI.

1 reference

12 December 2020

Conformationally driven gas-phase H/D exchange of dinucleotide negative ions

1 reference

12 December 2020

Characterization of noncovalent complexes formed between minor groove binding molecules and duplex DNA by electrospray ionization-mass spectrometry

1 reference

12 December 2020

Rapid identification of emerging infectious agents using PCR and electrospray ionization mass spectrometry

1 reference

12 December 2020

Mass spectral characterization of a protein-nucleic acid photocrosslink

1 reference

12 December 2020

MS3D structural elucidation of the HIV-1 packaging signal

1 reference

12 December 2020

1 reference

12 December 2020

Initial sequencing and analysis of the human genome

1 reference

12 December 2020

Turning junk into gold: domestication of transposable elements and the creation of new genes in eukaryotes

1 reference

12 December 2020