(Q85391976)

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Expression dynamics of the Medicago truncatula transcriptome during the symbiotic interaction with Sinorhizobium meliloti: which role for nitric oxide?

scientific article published on 07 November 2012

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scholarly article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23136381%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

Expression dynamics of the Medicago truncatula transcriptome during the symbiotic interaction with Sinorhizobium meliloti: which role for nitric oxide? (English)

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23136381%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

Medicago truncatula

1 reference

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Sinorhizobium meliloti

object named as

Sinorhizobium meliloti

1 reference

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inferred from title

4

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23136381%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

author name string

Alexandre Boscari

1

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17 February 2020

Jennifer Del Giudice

2

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17 February 2020

Alberto Ferrarini

3

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17 February 2020

Anne-Lise Zaffini

5

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17 February 2020

Massimo Delledonne

6

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17 February 2020

Alain Puppo

7

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Europe PubMed Central

PubMed publication ID

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17 February 2020

publication date

7 November 2012

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17 February 2020

number of pages

15

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Plant Physiology

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17 February 2020

161

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Europe PubMed Central

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17 February 2020

1

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17 February 2020

425-439

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Europe PubMed Central

PubMed publication ID

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17 February 2020

copyright license

Creative Commons Attribution 4.0 International

27 January 2021

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April 2022 Public Data File from Crossref

copyright status

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enod40, a gene expressed during nodule organogenesis, codes for a non-translatable RNA involved in plant growth

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Differential response of the plant Medicago truncatula to its symbiont Sinorhizobium meliloti or an exopolysaccharide-deficient mutant

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

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Flavone synthases from Medicago truncatula are flavanone-2-hydroxylases and are important for nodulation

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

How rhizobial symbionts invade plants: the Sinorhizobium-Medicago model

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcription reprogramming during root nodule development in Medicago truncatula

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

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Genes controlling early and late functions in symbiosis are located on a megaplasmid in Rhizobium meliloti.

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

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Nutrient sharing between symbionts

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https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

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Expression profiling in Medicago truncatula identifies more than 750 genes differentially expressed during nodulation, including many potential regulators of the symbiotic program.

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

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Global changes in gene expression in Sinorhizobium meliloti 1021 under microoxic and symbiotic conditions

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

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A large genome center's improvements to the Illumina sequencing system

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mapping and quantifying mammalian transcriptomes by RNA-Seq

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

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Highly conserved progesterone 5 beta-reductase genes (P5 beta R) from 5 beta-cardenolide-free and 5 beta-cardenolide-producing angiosperms.

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

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Regulation of plant arginase by wounding, jasmonate, and the phytotoxin coronatine

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Glutathione synthesis is regulated by nitric oxide in Medicago truncatula roots

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Symbiotic rhizobium and nitric oxide induce gene expression of non-symbiotic hemoglobin in Lotus japonicus.

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Plant and bacterial symbiotic mutants define three transcriptionally distinct stages in the development of the Medicago truncatula/Sinorhizobium meliloti symbiosis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Use of a subtractive hybridization approach to identify new Medicago truncatula genes induced during root nodule development

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

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Statistical significance for genomewide studies

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genesis: cluster analysis of microarray data

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

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Characterization of transcriptional complexity during berry development in Vitis vinifera using RNA-Seq.

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

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Nitric oxide functions as a signal in plant disease resistance

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

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Nitric oxide is required for an optimal establishment of the Medicago truncatula-Sinorhizobium meliloti symbiosis

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

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Genomic inventory and transcriptional analysis of Medicago truncatula transporters

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

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Legumes: importance and constraints to greater use.

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

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GATEWAY vectors for Agrobacterium-mediated plant transformation

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

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Redox changes during the legume-rhizobium symbiosis

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

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Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Coordinating nodule morphogenesis with rhizobial infection in legumes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A gene expression atlas of the model legume Medicago truncatula.

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

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Both plant and bacterial nitrate reductases contribute to nitric oxide production in Medicago truncatula nitrogen-fixing nodules.

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Medicago genome provides insight into the evolution of rhizobial symbioses

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

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BEDTools: a flexible suite of utilities for comparing genomic features

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MtHAP2-1 is a key transcriptional regulator of symbiotic nodule development regulated by microRNA169 in Medicago truncatula

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Plant formins: diverse isoforms and unique molecular mechanism

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nodulation phenotypes of gibberellin and brassinosteroid mutants of pea.

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Differentiation of symbiotic cells and endosymbionts in Medicago truncatula nodulation are coupled to two transcriptome-switches.

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Stochastic noise in splicing machinery

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nitric oxide-responsive genes and promoters in Arabidopsis thaliana: a bioinformatics approach

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Defense gene induction in tobacco by nitric oxide, cyclic GMP, and cyclic ADP-ribose

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cross-species EST alignments reveal novel and conserved alternative splicing events in legumes

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genes and signals in the rhizobium-legume symbiosis

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

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Medicago truncatula NIN is essential for rhizobial-independent nodule organogenesis induced by autoactive calcium/calmodulin-dependent protein kinase

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

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Nitrogen fixation mutants of Medicago truncatula fail to support plant and bacterial symbiotic gene expression

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

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Deciphering the plant splicing code: experimental and computational approaches for predicting alternative splicing and splicing regulatory elements

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Medicago truncatula N5 gene encoding a root-specific lipid transfer protein is required for the symbiotic interaction with Sinorhizobium meliloti.

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

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Aging in legume symbiosis. A molecular view on nodule senescence in Medicago truncatula

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CAP3: A DNA sequence assembly program

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sinorhizobium meliloti differentiation during symbiosis with alfalfa: a transcriptomic dissection

1 reference

https://pubmed.ncbi.nlm.nih.gov/23136381

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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