(Q89321458)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29954844%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

title

Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line (English)

1 reference

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3 April 2020

1 reference

5

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3 April 2020

author name string

Maria Nattestad

1

1 reference

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3 April 2020

Sara Goodwin

2

1 reference

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3 April 2020

Karen Ng

3

1 reference

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3 April 2020

Timour Baslan

4

1 reference

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3 April 2020

Philipp Rescheneder

6

1 reference

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3 April 2020

Tyler Garvin

7

1 reference

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3 April 2020

Han Fang

8

1 reference

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3 April 2020

James Gurtowski

9

1 reference

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3 April 2020

Elizabeth Hutton

10

1 reference

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3 April 2020

Elizabeth Tseng

11

1 reference

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3 April 2020

Chen-Shan Chin

12

1 reference

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3 April 2020

Timothy Beck

13

1 reference

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3 April 2020

Yogi Sundaravadanam

14

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3 April 2020

Melissa Kramer

15

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3 April 2020

Eric Antoniou

16

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3 April 2020

John D McPherson

17

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3 April 2020

James Hicks

18

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3 April 2020

W Richard McCombie

19

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3 April 2020

Michael C Schatz

20

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3 April 2020

publication date

28 June 2018

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3 April 2020

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3 April 2020

volume

28

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3 April 2020

page(s)

1126-1135

1 reference

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3 April 2020

issue

8

1 reference

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The number of heterozygous nucleotide sites maintained in a finite population due to steady flux of mutations

3 April 2020

cites work

1 reference

12 December 2020

A census of human cancer genes

1 reference

12 December 2020

Circular binary segmentation for the analysis of array-based DNA copy number data

1 reference

12 December 2020

GMAP: a genomic mapping and alignment program for mRNA and EST sequences

1 reference

12 December 2020

A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes

1 reference

12 December 2020

The impact of translocations and gene fusions on cancer causation

1 reference

12 December 2020

DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome

1 reference

12 December 2020

Targeting HER2-positive breast cancer with trastuzumab-DM1, an antibody-cytotoxic drug conjugate

1 reference

12 December 2020

Real-time DNA sequencing from single polymerase molecules

1 reference

12 December 2020

The Sequence Alignment/Map format and SAMtools

1 reference

12 December 2020

Circos: an information aesthetic for comparative genomics

1 reference

12 December 2020

BEDTools: a flexible suite of utilities for comparing genomic features

1 reference

12 December 2020

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

1 reference

12 December 2020

Identification of fusion genes in breast cancer by paired-end RNA-sequencing

1 reference

12 December 2020

Hallmarks of Cancer: The Next Generation

1 reference

12 December 2020

Tumour evolution inferred by single-cell sequencing

1 reference

12 December 2020

Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer genomes

1 reference

12 December 2020

A novel bioinformatics pipeline for identification and characterization of fusion transcripts in breast cancer and normal cell lines

1 reference

12 December 2020

TopHat-Fusion: an algorithm for discovery of novel fusion transcripts

1 reference

12 December 2020

Trastuzumab produces therapeutic actions by upregulating miR-26a and miR-30b in breast cancer cells

1 reference

12 December 2020

The life history of 21 breast cancers

1 reference

12 December 2020

Genomic dark matter: the reliability of short read mapping illustrated by the genome mappability score

1 reference

12 December 2020

GENCODE: the reference human genome annotation for The ENCODE Project

1 reference

12 December 2020

DELLY: structural variant discovery by integrated paired-end and split-read analysis

1 reference

12 December 2020

BreakTrans: uncovering the genomic architecture of gene fusions

1 reference

12 December 2020

Emerging patterns of somatic mutations in cancer

1 reference

12 December 2020

A single-molecule long-read survey of the human transcriptome

1 reference

12 December 2020

Mutational landscape and significance across 12 major cancer types

1 reference

12 December 2020

Association of a germline copy number polymorphism of APOBEC3A and APOBEC3B with burden of putative APOBEC-dependent mutations in breast cancer

1 reference

12 December 2020

LUMPY: a probabilistic framework for structural variant discovery.

1 reference

12 December 2020

Resolving the complexity of the human genome using single-molecule sequencing

1 reference

12 December 2020

PopIns: population-scale detection of novel sequence insertions

1 reference

12 December 2020

Characterization of fusion genes and the significantly expressed fusion isoforms in breast cancer by hybrid sequencing.

1 reference

12 December 2020

Assembly and diploid architecture of an individual human genome via single-molecule technologies

1 reference

12 December 2020

Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing

1 reference

12 December 2020

An integrated map of structural variation in 2,504 human genomes

1 reference

12 December 2020

Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications.

1 reference

12 December 2020

GMAP and GSNAP for Genomic Sequence Alignment: Enhancements to Speed, Accuracy, and Functionality

1 reference

12 December 2020

Resolving complex structural genomic rearrangements using a randomized approach

1 reference

12 December 2020

Assemblytics: a web analytics tool for the detection of variants from an assembly.

1 reference

12 December 2020

Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing

1 reference

12 December 2020

De novo assembly and phasing of a Korean human genome.

1 reference

12 December 2020

Phased diploid genome assembly with single-molecule real-time sequencing.

1 reference

12 December 2020

Discovery and genotyping of structural variation from long-read haploid genome sequence data.

1 reference

12 December 2020

Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast

1 reference

12 December 2020

DangerTrack: A scoring system to detect difficult-to-assess regions

1 reference

12 December 2020

Accurate detection of complex structural variations using single-molecule sequencing

1 reference

12 December 2020

Identifiers

DOI

10.1101/GR.231100.117

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29954844%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

1 reference

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3 April 2020

1 reference