(Q91904936)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

title

Altered differentiation is central to HIV-specific CD4+ T cell dysfunction in progressive disease (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Julia Niessl

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Daniel E Kaufmann

23

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

20

Richard T Wyatt

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

21

Andrés Finzi

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

18

Cécile Tremblay

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

Krystelle Nganou-Makamdop

25 April 2020

8

object named as

Krystelle Nganou-Makamdop

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

3

Mathieu Dubé

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

22

Daniel C Douek

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Gabrielle Gendron-Lepage

10

object named as

Gabrielle Gendron-Lepage

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

1

Antigoni Morou

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

19

Jean-Pierre Routy

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

13

Amy E Baxter

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

author name string

Elsa Brunet-Ratnasingham

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Roxanne Charlebois

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Eloi Mercier

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Sam Darko

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Sahaana Arumugam

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Lifei Yang

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

James M Billingsley

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Premeela A Rajakumar

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

François Lefebvre

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

R Paul Johnson

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

publication date

15 July 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

volume

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

issue

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

page(s)

1059-1070

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

Fecal Microbiota Composition Drives Immune Activation in HIV-infected Individuals.

25 April 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Late arising T follicular helper cells cultivate the B cell crop during chronic infections.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Sustained T follicular helper cell response is essential for control of chronic viral infection.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

CD4+ T Cell Differentiation in Chronic Viral Infections: The Tfh Perspective.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Comparative analysis of activation induced marker (AIM) assays for sensitive identification of antigen-specific CD4 T cells

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Multiparametric characterization of rare HIV-infected cells using an RNA-flow FISH technique

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Salmon provides fast and bias-aware quantification of transcript expression

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Dysbiosis and the immune system

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Pathologically expanded peripheral T helper cell subset drives B cells in rheumatoid arthritis

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Protective neutralizing influenza antibody response in the absence of T follicular helper cells

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

The multifaceted role of CD4(+) T cells in CD8(+) T cell memory

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

IL-21 and probiotic therapy improve Th17 frequencies, microbial translocation, and microbiome in ARV-treated, SIV-infected macaques

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Proteobacteria: microbial signature of dysbiosis in gut microbiota

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Molecular and cellular insights into T cell exhaustion

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

limma powers differential expression analyses for RNA-sequencing and microarray studies

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Dysbiotic bacteria translocate in progressive SIV infection.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

High-throughput detection of miRNAs and gene-specific mRNA at the single-cell level by flow cytometry

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Fluorescently activated cell sorting followed by microarray profiling of helper T cell subtypes from human peripheral blood

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Interleukin-22 regulates the complement system to promote resistance against pathobionts after pathogen-induced intestinal damage.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

T follicular helper cell differentiation, function, and roles in disease

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Distinctive features of CD4+ T cell dysfunction in chronic viral infections

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Trimmomatic: a flexible trimmer for Illumina sequence data

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Molecular and transcriptional basis of CD4⁺ T cell dysfunction during chronic infection

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Pro-inflammatory human Th17 cells selectively express P-glycoprotein and are refractory to glucocorticoids.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Human circulating PD-1+CXCR3-CXCR5+ memory Tfh cells are highly functional and correlate with broadly neutralizing HIV antibody responses

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

CD4⁺ follicular helper T cell infiltration predicts breast cancer survival

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Inadequate T follicular cell help impairs B cell immunity during HIV infection.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Follicular helper T cells serve as the major CD4 T cell compartment for HIV-1 infection, replication, and production

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

STAR: ultrafast universal RNA-seq aligner

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Expansion of HIV-specific T follicular helper cells in chronic HIV infection

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

CD4 T follicular helper cell dynamics during SIV infection

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

A role for mucosal IL-22 production and Th22 cells in HIV-associated mucosal immunopathogenesis.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Effector CD4+ T cell expression signatures and immune-mediated disease associated genes

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Camera: a competitive gene set test accounting for inter-gene correlation

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Fast gapped-read alignment with Bowtie 2

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Expanding roles for CD4⁺ T cells in immunity to viruses.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Responsiveness of HIV-specific CD4 T cells to PD-1 blockade

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Full-length transcriptome assembly from RNA-Seq data without a reference genome

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Viral persistence redirects CD4 T cell differentiation toward T follicular helper cells

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

HIV controllers with HLA-DRB1*13 and HLA-DQB1*06 alleles have strong, polyfunctional mucosal CD4+ T-cell responses

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

A framework for oligonucleotide microarray preprocessing.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Tryptophan catabolism by indoleamine 2,3-dioxygenase 1 alters the balance of TH17 to regulatory T cells in HIV disease

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Mechanisms underlying lineage commitment and plasticity of helper CD4+ T cells

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Susceptibility of human Th17 cells to human immunodeficiency virus and their perturbation during infection.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Critical loss of the balance between Th17 and T regulatory cell populations in pathogenic SIV infection

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Upregulation of CTLA-4 by HIV-specific CD4+ T cells correlates with disease progression and defines a reversible immune dysfunction

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Microbial translocation is a cause of systemic immune activation in chronic HIV infection

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Rapid evolution of the neutralizing antibody response to HIV type 1 infection

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

Basic local alignment search tool

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6642691

10.1038/S41590-019-0418-X

23 February 2021

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31308541%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

PubMed publication ID

31308541

1 reference