Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q92278622)
Watch
English
Pathogen Genomics in Public Health
scientific article published on 01 December 2019
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
7008580
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31881145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 April 2020
title
Pathogen Genomics in Public Health
(English)
1 reference
stated in
Europe PubMed Central
PMCID
7008580
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31881145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 April 2020
main subject
genomics
1 reference
based on heuristic
inferred from title
author
Duncan Maccannell
series ordinal
2
object named as
Duncan R MacCannell
1 reference
stated in
Europe PubMed Central
PMCID
7008580
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31881145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 April 2020
author name string
Gregory L Armstrong
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
7008580
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31881145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 April 2020
Jill Taylor
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMCID
7008580
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31881145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 April 2020
Heather A Carleton
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMCID
7008580
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31881145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 April 2020
Elizabeth B Neuhaus
series ordinal
5
1 reference
stated in
Europe PubMed Central
PMCID
7008580
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31881145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 April 2020
Richard S Bradbury
series ordinal
6
1 reference
stated in
Europe PubMed Central
PMCID
7008580
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31881145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 April 2020
James E Posey
series ordinal
7
1 reference
stated in
Europe PubMed Central
PMCID
7008580
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31881145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 April 2020
Marta Gwinn
series ordinal
8
1 reference
stated in
Europe PubMed Central
PMCID
7008580
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31881145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 April 2020
language of work or name
English
0 references
publication date
1 December 2019
1 reference
stated in
Europe PubMed Central
PMCID
7008580
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31881145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 April 2020
published in
The New England Journal of Medicine
1 reference
stated in
Europe PubMed Central
PMCID
7008580
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31881145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 April 2020
volume
381
1 reference
stated in
Europe PubMed Central
PMCID
7008580
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31881145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 April 2020
page(s)
2569-2580
1 reference
stated in
Europe PubMed Central
PMCID
7008580
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31881145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 April 2020
issue
26
1 reference
stated in
Europe PubMed Central
PMCID
7008580
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31881145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 April 2020
cites work
Travel Surveillance and Genomics Uncover a Hidden Zika Outbreak during the Waning Epidemic
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Research and training recommendations for public health data science
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Whole genome sequencing for improved understanding of Mycobacterium tuberculosis transmission in a remote circumpolar region
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Genotyping genetically heterogeneous Cyclospora cayetanensis infections to complement epidemiological case linkage
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Societal Implications of the Internet of Pathogens
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Next-Generation Sequencing of Infectious Pathogens
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Update: Influenza Activity - United States, September 30, 2018-February 2, 2019
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Platforms and Analytical Tools Used in Nucleic Acid Sequence-Based Microbial Genotyping Procedures
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Impact of whole genome sequencing on the investigation of food-borne outbreaks of Shiga toxin-producing serogroup O157:H7, England, 2013 to 2017
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Purification of oocysts obtained from human stool specimens for whole genome sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Spatial structuring of a Legionella pneumophila population within the water system of a large occupational building
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Multiple introductions and subsequent transmission of multidrug-resistant Candida auris in the USA: a molecular epidemiological survey
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Prediction of Susceptibility to First-Line Tuberculosis Drugs by DNA Sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
A systematic method for surveying data visualizations and a resulting genomic epidemiology visualization typology: GEViT
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Restriction enzyme digestion of host DNA enhances universal detection of parasitic pathogens in blood via targeted amplicon deep sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Identifying Clusters of Recent and Rapid HIV Transmission Through Analysis of Molecular Surveillance Data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
BMScan: using whole genome similarity to rapidly and accurately identify bacterial meningitis causing species
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Disease surveillance data sharing for public health: the next ethical frontiers
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Operational burden of implementing Salmonella Enteritidis and Typhimurium cluster detection using whole genome sequencing surveillance data in England: a retrospective assessment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Recurrence of tuberculosis in a low-incidence setting: a retrospective cross-sectional study augmented by whole genome sequencing.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Direct Whole-Genome Sequencing of Sputum Accurately Identifies Drug-Resistant Mycobacterium tuberculosis Faster than MGIT Culture Sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Nextstrain: real-time tracking of pathogen evolution.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Correction: Epidemiological links between tuberculosis cases identified twice as efficiently by whole genome sequencing than conventional molecular typing: A population-based study.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Genotyping and Whole Genome Sequencing to Identify Tuberculosis Transmission to Pediatric Patients in British Columbia, Canada, 2005-2014.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
65 Years of influenza surveillance by a WHO-coordinated global network.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Multiplicity and molecular epidemiology of Plasmodium vivax and Plasmodium falciparum infections in East Africa
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Molecular Epidemiology and the Transformation of HIV Prevention.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Statistical Method to Detect Tuberculosis Outbreaks among Endemic Clusters in a Low-Incidence Setting.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Use of Influenza Risk Assessment Tool for Prepandemic Preparedness.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Candidate-gene based GWAS identifies reproducible DNA markers for metabolic pyrethroid resistance from standing genetic variation in East African Anopheles gambiae.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
A next-generation sequencing and bioinformatics protocol for Malaria drug Resistance marker Surveillance (MaRS).
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
HIV-TRACE (Transmission Cluster Engine): a tool for large scale molecular epidemiology of HIV-1 and other rapidly evolving pathogens.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Inference of genetic relatedness between viral quasispecies from sequencing data.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
GHOST: global hepatitis outbreak and surveillance technology.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Genomics of foodborne pathogens for microbial food safety
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Targeted DNA enrichment and whole genome sequencing of Neisseria meningitidis directly from clinical specimens.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Towards a genomics-informed, real-time, global pathogen surveillance system
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Mycobacterium tuberculosis and whole-genome sequencing: how close are we to unleashing its full potential?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Next-generation sequencing technologies and their application to the study and control of bacterial infections.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Legionnaires' Disease Outbreak Caused by Endemic Strain of Legionella pneumophila, New York, New York, USA, 2015
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Population and Whole Genome Sequence Based Characterization of Invasive Group A Streptococci Recovered in the United States during 2015.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
An influenza A virus (H7N9) anti-neuraminidase monoclonal antibody protects mice from morbidity without interfering with the development of protective immunity to subsequent homologous challenge
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Novel influenza A viruses and pandemic threats.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Establishment and cryptic transmission of Zika virus in Brazil and the Americas
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Genome-Wide Transcription and Functional Analyses Reveal Heterogeneous Molecular Mechanisms Driving Pyrethroids Resistance in the Major Malaria Vector Anopheles funestus Across Africa
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Incidence and Trends of Infections with Pathogens Transmitted Commonly Through Food and the Effect of Increasing Use of Culture-Independent Diagnostic Tests on Surveillance - Foodborne Diseases Active Surveillance Network, 10 U.S. Sites, 2013-2016.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Virus genomes reveal factors that spread and sustained the Ebola epidemic
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Comprehensive Whole-Genome Sequencing and Reporting of Drug Resistance Profiles on Clinical Cases of Mycobacterium tuberculosis in New York State
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Microreact: visualizing and sharing data for genomic epidemiology and phylogeography
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Utility of Combining Whole Genome Sequencing with Traditional Investigational Methods To Solve Foodborne Outbreaks of Salmonella Infections Associated with Chicken: A New Tool for Tackling This Challenging Food Vehicle
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Whole Genome Sequencing-Implications for Infection Prevention and Outbreak Investigations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Short-read whole genome sequencing for determination of antimicrobial resistance mechanisms and capsular serotypes of current invasive Streptococcus agalactiae recovered in the USA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Improving the selection and development of influenza vaccine viruses - Report of a WHO informal consultation on improving influenza vaccine virus selection, Hong Kong SAR, China, 18-20 November 2015
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Next-generation sequencing-based user-friendly platforms for drug-resistant tuberculosis diagnosis: A promise for the near future
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
A brief primer on genomic epidemiology: lessons learned from Mycobacterium tuberculosis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Establishing Genotypic Cutoff Values To Measure Antimicrobial Resistance in Salmonella
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Simultaneous Emergence of Multidrug-Resistant Candida auris on 3 Continents Confirmed by Whole-Genome Sequencing and Epidemiological Analyses
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Whole genome sequencing of Mycobacterium tuberculosis for detection of drug resistance: a systematic review
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Future challenges for tracking foodborne diseases: PulseNet, a 20-year-old US surveillance system for foodborne diseases, is expanding both globally and technologically
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Genomic Epidemiology of Gonococcal Resistance to Extended-Spectrum Cephalosporins, Macrolides, and Fluoroquinolones in the United States, 2000-2013
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Using whole genome sequencing to identify resistance determinants and predict antimicrobial resistance phenotypes for year 2015 invasive pneumococcal disease isolates recovered in the United States
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Characterization of new Salmonella serovars by whole-genome sequencing and traditional typing techniques
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Whole-Genome Sequencing for Detecting Antimicrobial Resistance in Nontyphoidal Salmonella
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Implementation of Whole Genome Sequencing (WGS) for Identification and Characterization of Shiga Toxin-Producing Escherichia coli (STEC) in the United States
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Enhanced Genetic Characterization of Influenza A(H3N2) Viruses and Vaccine Effectiveness by Genetic Group, 2014-2015.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Coming of age: ten years of next-generation sequencing technologies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Infection with Pathogens Transmitted Commonly Through Food and the Effect of Increasing Use of Culture-Independent Diagnostic Tests on Surveillance--Foodborne Diseases Active Surveillance Network, 10 U.S. Sites, 2012-2015.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Identification of Salmonella for public health surveillance using whole genome sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Practical Value of Food Pathogen Traceability through Building a Whole-Genome Sequencing Network and Database
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Whole Genome Sequencing for Public Health Surveillance of Shiga Toxin-Producing Escherichia coli Other than Serogroup O157.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Real-time, portable genome sequencing for Ebola surveillance
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
The utility of multiple molecular methods including whole genome sequencing as tools to differentiate Escherichia coli O157:H7 outbreaks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
WGS accurately predicts antimicrobial resistance in Escherichia coli
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
The role of pathogen genomics in assessing disease transmission
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
A molecular phylogenetics-based approach for identifying recent hepatitis C virus transmission events
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Whole-genome sequencing for national surveillance of Shiga toxin-producing Escherichia coli O157.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Bacterial enteric infections detected by culture-independent diagnostic tests--FoodNet, United States, 2012-2014.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Epidemiologic data and pathogen genome sequences: a powerful synergy for public health
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Genomic characterization of a large outbreak of Legionella pneumophila serogroup 1 strains in Quebec City, 2012
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Pandemic preparedness and the Influenza Risk Assessment Tool (IRAT).
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Whole-genome sequencing to detect recent transmission of Mycobacterium tuberculosis in settings with a high burden of tuberculosis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Universal influenza B virus genomic amplification facilitates sequencing, diagnostics, and reverse genetics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Listeriosis outbreaks and associated food vehicles, United States, 1998-2008
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Tracking a hospital outbreak of carbapenem-resistant Klebsiella pneumoniae with whole-genome sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Routine use of microbial whole genome sequencing in diagnostic and public health microbiology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Whole-genome sequencing and social-network analysis of a tuberculosis outbreak
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Single-reaction genomic amplification accelerates sequencing and vaccine production for classical and Swine origin human influenza a viruses.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7008580
retrieved
23 February 2021
Identifiers
DOI
10.1056/NEJMSR1813907
1 reference
stated in
Europe PubMed Central
PMCID
7008580
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31881145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 April 2020
PMCID
7008580
1 reference
stated in
Europe PubMed Central
PMCID
7008580
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31881145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 April 2020
PubMed ID
31881145
1 reference
stated in
Europe PubMed Central
PMCID
7008580
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31881145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 April 2020
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit
