(Q101468067)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33166005%20AND%20SRC:MED&resulttype=core&format=json

11 November 2020

title

The ImageJ Ecosystem: open-source software for image visualization, processing, and analysis (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33166005%20AND%20SRC:MED&resulttype=core&format=json

11 November 2020

1 reference

1 reference

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6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33166005%20AND%20SRC:MED&resulttype=core&format=json

11 November 2020

3

Curtis T Rueden

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33166005%20AND%20SRC:MED&resulttype=core&format=json

11 November 2020

4

Pavel Tomancak

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33166005%20AND%20SRC:MED&resulttype=core&format=json

11 November 2020

5

Florian Jug

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33166005%20AND%20SRC:MED&resulttype=core&format=json

11 November 2020

author name string

Alexandra B Schroeder

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33166005%20AND%20SRC:MED&resulttype=core&format=json

11 November 2020

Ellen T A Dobson

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33166005%20AND%20SRC:MED&resulttype=core&format=json

11 November 2020

language of work or name

English

0 references

publication date

9 November 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33166005%20AND%20SRC:MED&resulttype=core&format=json

11 November 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33166005%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

11 November 2020

volume

30

0 references

issue

1

0 references

page(s)

234-249

0 references

ImageJ

1 reference

based on heuristic

inferred from title

maintained by WikiProject

1 reference

0 references

A high-level 3D visualization API for Java and ImageJ

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1186/1471-2105-11-274

IJ-OpenCV: Combining ImageJ and OpenCV for processing images in biomedicine

2 references

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

20 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1016/J.COMPBIOMED.2017.03.027

SlideJ: An ImageJ plugin for automated processing of whole slide images

2 references

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

20 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1371/JOURNAL.PONE.0180540

ImageJ2: ImageJ for the next generation of scientific image data

2 references

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

20 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1186/S12859-017-1934-Z

ImageJ analysis of dentin tubule distribution in human teeth

2 references

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

20 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1016/J.TICE.2015.05.004

Quantitating the cell: turning images into numbers with ImageJ

2 references

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

20 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1002/WDEV.260

AxonTracer: a novel ImageJ plugin for automated quantification of axon regeneration in spinal cord tissue.

2 references

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

20 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1186/S12868-018-0409-0

Impact of Software Selection and ImageJ Tutorial Corrigendum on Skeletal Muscle Measures at the Third Lumbar Vertebra on Computed Tomography Scans in Clinical Populations

2 references

20 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1002/JPEN.1036

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Automatic cell counting with ImageJ

2 references

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

20 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1016/J.AB.2014.12.007

Measurement of cell traction forces with ImageJ

2 references

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

20 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1016/BS.MCB.2014.10.008

Using ImageJ (Fiji) to Analyze and Present X-Ray CT Images of Enamel

2 references

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

20 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1007/978-1-4939-9012-2_26

AstroImageJ: Image processing and photometric extraction for ultra-precise astronomical light curves

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Robust single-particle tracking in live-cell time-lapse sequences

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Simultaneous two-photon spectral and lifetime fluorescence microscopy

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

In vitro Cell Migration, Invasion, and Adhesion Assays: From Cell Imaging to Data Analysis

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

The WEKA data mining software: an update

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Author Correction: U-Net: deep learning for cell counting, detection, and morphometry

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Objective comparison of particle tracking methods

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Efficient Bayesian-based multiview deconvolution

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Fluorescence nanoscopy in cell biology.

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Scientific Community Image Forum: A discussion forum for scientific image software

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Nonlinear magic: multiphoton microscopy in the biosciences

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Automated measurement of fast mitochondrial transport in neurons

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Content-aware image restoration: pushing the limits of fluorescence microscopy

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

ClearVolume: open-source live 3D visualization for light-sheet microscopy

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Biological imaging software tools

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Current challenges in open-source bioimage informatics.

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Deep learning enables cross-modality super-resolution in fluorescence microscopy

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

NIH Image to ImageJ: 25 years of image analysis

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Polarized Fluorescence Microscopy to Study Cytoskeleton Assembly and Organization in Live Cells

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Image processing for precise three-dimensional registration and stitching of thick high-resolution laser-scanning microscopy image stacks.

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Fluorescence lifetime imaging of free and protein-bound NADH

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

TrackMate: An open and extensible platform for single-particle tracking.

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Light sheet microscopy

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

TrakEM2 software for neural circuit reconstruction

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

SCIFIO: an extensible framework to support scientific image formats

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Image analysis and machine learning in digital pathology: Challenges and opportunities

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Hierarchical Cluster Analysis to Aid Diagnostic Image Data Visualization of MS and Other Medical Imaging Modalities

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Fijiyama: a registration tool for 3D multimodal time-lapse imaging

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Dense-UNet: a novel multiphoton in vivo cellular image segmentation model based on a convolutional neural network

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Label free, quantitative single-cell fate tracking of time-lapse movies

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Metadata matters: access to image data in the real world

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Assessing microscope image focus quality with deep learning.

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

BigStitcher: reconstructing high-resolution image datasets of cleared and expanded samples

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

OpenSPIM: an open-access light-sheet microscopy platform.

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Virtual histological staining of unlabelled tissue-autofluorescence images via deep learning

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

The fluorescent toolbox for assessing protein location and function

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

BigDataViewer: visualization and processing for large image data sets

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Open Source Tools for Biological Image Analysis

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Fluorescence lifetime measurements and biological imaging

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Fiji: an open-source platform for biological-image analysis

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Computational methods for stitching, alignment, and artifact correction of serial section data

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Segmentation of Total Cell Area in Brightfield Microscopy Images.

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

A deep learning model for the detection of both advanced and early glaucoma using fundus photography

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Software for bead-based registration of selective plane illumination microscopy data

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Computer-aided neurophysiology and imaging with open-source PhysImage.

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

A gentle introduction to deep learning in medical image processing

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Machine Learning Interface for Medical Image Analysis

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Proximity Ligation Assay Image Analysis Protocol: Addressing Receptor-Receptor Interactions

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

ImgLib2--generic image processing in Java

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PRO.3993

Identifiers

DOI

10.1002/PRO.3993

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33166005%20AND%20SRC:MED&resulttype=core&format=json

11 November 2020

0 references

1 reference