(Q110451229)

https://api.crossref.org/v1/works/10.3390/d11070108

sponsor

Center for Hierarchical Manufacturing

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

author

Edward L. Braun

2

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Nitish Narula

3

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Siavash Mirarab

object named as

Siavash Mirarab

5

0 references

author name string

Peter Houde

1

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Uriel Minjares

4

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

publication date

6 July 2019

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

volume

11

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

issue

7

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

page(s)

108

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

copyright license

Creative Commons Attribution 4.0 International

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

cites work

Interordinal relationships of birds and other reptiles based on whole mitochondrial genomes

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Examining Basal Avian Divergences with Mitochondrial Sequences: Model Complexity, Taxon Sampling, and Sequence Length

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Mitochondrial genomes and avian phylogeny: complex characters and resolvability without explosive radiations

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Basal divergences in birds and the phylogenetic utility of the nuclear RAG-1 gene

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

New nuclear evidence for the oldest divergence among neognath birds: the phylogenetic utility of ZENK (i).

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Parallel radiations in the primary clades of birds

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Diversification of Neoaves: integration of molecular sequence data and fossils

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Introns outperform exons in analyses of basal avian phylogeny using clathrin heavy chain genes.

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Birds in a bush: five genes indicate explosive evolution of avian orders

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

A phylogenomic study of birds reveals their evolutionary history

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Testing hypotheses about the sister group of the passeriformes using an independent 30-locus data set.

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Identifying localized biases in large datasets: a case study using the avian tree of life

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Whole-genome analyses resolve early branches in the tree of life of modern birds

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

The phylogenomic forest of bird trees contains a hard polytomy at the root of Neoaves

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Why do phylogenomic data sets yield conflicting trees? Data type influences the avian tree of life more than taxon sampling

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Testing for Polytomies in Phylogenetic Species Trees Using Quartet Frequencies.

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Gene tree discordance, phylogenetic inference and the multispecies coalescent

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Is a new and general theory of molecular systematics emerging?

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Multi-allele species reconstruction using ASTRAL

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

POLYTOMIES, THE POWER OF PHYLOGENETIC INFERENCE, AND THE STOCHASTIC NATURE OF MOLECULAR EVOLUTION: A COMMENT ON WALSH ET AL. (1999)

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Cases in which Parsimony or Compatibility Methods will be Positively Misleading

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Bird evolution: testing the Metaves clade with six new mitochondrial genomes

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Gaps: An Elusive Source of Phylogenetic Information

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Biologically inspired phylogenetic models strongly outperform the no common mechanism model.

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

An evolutionary model for maximum likelihood alignment of DNA sequences

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Inching toward reality: an improved likelihood model of sequence evolution

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Solving the master equation for Indels

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Wagner and Dollo: a stochastic duet by composing two parsimonious solos.

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

On the impossibility of reconstructing ancestral data and phylogenies.

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

A "Long Indel" model for evolutionary sequence alignment.

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Meta-analysis of indels causing human genetic disease: mechanisms of mutagenesis and the role of local DNA sequence complexity

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Mechanism of a genetic glissando: structural biology of indel mutations.

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

The majority of recent short DNA insertions in the human genome are tandem duplications.

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Genome and gene alterations by insertions and deletions in the evolution of human and chimpanzee chromosome 22.

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Comparative analysis of mitochondrial fragments transferred to the nucleus in vertebrate

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Comparative Genomics Reveals a Burst of Homoplasy-Free Numt Insertions

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Mobilizing diversity: transposable element insertions in genetic variation and disease

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Families of transposable elements, population structure and the origin of species

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Retroposon insertion patterns of neoavian birds: strong evidence for an extensive incomplete lineage sorting era

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Phylogenetic utility and evolution of indels: a study in neognathous birds

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Phylogenomic analyses data of the avian phylogenomics project

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

2matrix: A utility for indel coding and phylogenetic matrix concatenation(1.).

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

GapCoder automates the use of indel characters in phylogenetic analysis

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

TNT, a free program for phylogenetic analysis

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

THE RETENTION INDEX AND THE RESCALED CONSISTENCY INDEX

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

DiscoVista: interpretable visualizations of gene tree discordance.

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Evolution of terrestrial birds in three continents: biogeography and parallel radiations

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Hemiplasy: a new term in the lexicon of phylogenetics.

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Are transposable element insertions homoplasy free?: an examination using the avian tree of life

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Error in Phylogenetic Estimation for Bushes in the Tree of Life

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

The gene tree delusion

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

The Irrelevance of Allele Tree Topologies for Species Delimitation, and a Non-Topological Alternative

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Trees within trees: genes and species, molecules and morphology

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Slicing hyperdimensional oranges: the geometry of phylogenetic estimation.

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

The Dynamics of Incomplete Lineage Sorting across the Ancient Adaptive Radiation of Neoavian Birds

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

True Homoplasy of Retrotransposon Insertions in Primates

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

POLYTOMIES AND THE POWER OF PHYLOGENETIC INFERENCE.

1 reference

https://api.crossref.org/v1/works/10.3390/d11070108

Statistical binning enables an accurate coalescent-based estimation of the avian tree

1 reference