(Q34352662)

1 August 2017

Identifying localized biases in large datasets: a case study using the avian tree of life (English)

1 reference

1 August 2017

1 reference

5

1 reference

1 August 2017

1

Rebecca T Kimball

1 reference

PubMed ID

23791948

1 August 2017

Victoria Heimer-McGinn

object named as

Victoria Heimer-McGinn

series ordinal

3

0 references

author name string

Ning Wang

series ordinal

2

1 reference

PubMed ID

23791948

1 August 2017

Carly Ferguson

series ordinal

4

1 reference

1 August 2017

20 June 2013

1 reference

Molecular Phylogenetics and Evolution

1 August 2017

1 reference

1 August 2017

69

1 reference

1 August 2017

1021-1032

1 reference

1 August 2017

3

1 reference

Examining Basal Avian Divergences with Mitochondrial Sequences: Model Complexity, Taxon Sampling, and Sequence Length

1 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Homoplastic microinversions and the avian tree of life

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Introns outperform exons in analyses of basal avian phylogeny using clathrin heavy chain genes.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Mosaic retroposon insertion patterns in placental mammals

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Discordance of species trees with their most likely gene trees.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Broad phylogenomic sampling improves resolution of the animal tree of life

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

MUSCLE: multiple sequence alignment with high accuracy and high throughput

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Diversification of Neoaves: integration of molecular sequence data and fossils

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Parallel radiations in the primary clades of birds

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Resolution of a supertree/supermatrix paradox

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

A phylogenomic study of birds reveals their evolutionary history

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Multiple nuclear genes and retroposons support vicariance and dispersal of the palaeognaths, and an Early Cretaceous origin of modern birds

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Mammalian evolution may not be strictly bifurcating

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Are transposable element insertions homoplasy free?: an examination using the avian tree of life

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Phylogenomic evidence for multiple losses of flight in ratite birds

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic Analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Phylogenomics: the beginning of incongruence?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Repbase Update, a database of eukaryotic repetitive elements

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Multiple alignment of DNA sequences with MAFFT

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

From reptilian phylogenomics to reptilian genomes: analyses of c-Jun and DJ-1 proto-oncogenes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

A well-tested set of primers to amplify regions spread across the avian genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Inconsistency of phylogenetic estimates from concatenated data under coalescence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Estimating species trees from unrooted gene trees.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Estimating species phylogenies using coalescence times among sequences.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Retroposon insertion patterns of neoavian birds: strong evidence for an extensive incomplete lineage sorting era

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Identifying site-specific substitution rates.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Bird evolution: testing the Metaves clade with six new mitochondrial genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Retroposon analysis and recent geological data suggest near-simultaneous divergence of the three superorders of mammals

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

T-Coffee: A novel method for fast and accurate multiple sequence alignment

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Microevolutionary processes generate phylogenomic discordance at ancient divergences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Evolution of modern birds revealed by mitogenomics: timing the radiation and origin of major orders

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Phylogenomics revives traditional views on deep animal relationships

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Resolving difficult phylogenetic questions: why more sequences are not enough

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Genome-scale phylogeny and the detection of systematic biases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Birds in a bush: five genes indicate explosive evolution of avian orders

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Toward resolving deep neoaves phylogeny: data, signal enhancement, and priors

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Genome-scale approaches to resolving incongruence in molecular phylogenies

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Concatenated analysis sheds light on early metazoan evolution and fuels a modern "urmetazoon" hypothesis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

STRAW: Species TRee Analysis Web server

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

The development of three long universal nuclear protein-coding locus markers and their application to osteichthyan phylogenetics with nested PCR

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Ratite nonmonophyly: independent evidence from 40 novel Loci

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Mesozoic retroposons reveal parrots as the closest living relatives of passerine birds

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Sparse supermatrices for phylogenetic inference: taxonomy, alignment, rogue taxa, and the phylogeny of living turtles

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

IQPNNI: moving fast through tree space and stopping in time.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Testing hypotheses about the sister group of the passeriformes using an independent 30-locus data set.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

7 January 2021

The genome of a songbird

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Genomics, biogeography, and the diversification of placental mammals

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.05.029

10.1016/J.YMPEV.2013.05.029

7 January 2021

Identifiers

DOI

1 reference

1 August 2017

1 reference

PubMed ID

23791948