(Q21132293)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24608750%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

title

Deep RNA sequencing reveals hidden features and dynamics of early gene transcription in Paramecium bursaria chlorella virus 1 (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24608750%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

0 references

Paramecium bursaria

1 reference

based on heuristic

inferred from title

author

Jean-Jack M Riethoven

8

Jean-Jack Riethoven

Jean-Jack

Riethoven

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24608750%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

1

Guillaume Blanc

Guillaume

Blanc

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24608750%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

2

Michael Mozar

Michael

Mozar

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24608750%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

9

David D Dunigan

David D

Dunigan

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24608750%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Irina V Agarkova

3

Irina V

Agarkova

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24608750%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

James R Gurnon

4

James R

Gurnon

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24608750%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Giane Yanai-Balser

5

Giane

Yanai-Balser

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24608750%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Janet M Rowe

6

Janet M

Rowe

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24608750%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Yuannan Xia

7

Yuannan

Xia

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24608750%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

James L Van Etten

10

James L

Van Etten

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24608750%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

language of work or name

English

0 references

publication date

7 March 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24608750%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24608750%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

volume

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24608750%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

issue

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24608750%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

page(s)

e90989

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24608750%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons CC0 License

10 March 2020

copyright license

start time

7 March 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

0 references

cites work

The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Eukaryotic large nucleo-cytoplasmic DNA viruses: clusters of orthologous genes and reconstruction of viral genome evolution

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

TopHat: discovering splice junctions with RNA-Seq

6 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

The Phycodnaviridae: the story of how tiny giants rule the world

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

BLAT—The BLAST-Like Alignment Tool

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Common origin of four diverse families of large eukaryotic DNA viruses

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Cluster analysis and display of genome-wide expression patterns

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Mapping and quantifying mammalian transcriptomes by RNA-Seq

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

WebLogo: A Sequence Logo Generator

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Evolutionary genomics of nucleo-cytoplasmic large DNA viruses

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Global analysis of Chlorella variabilis NC64A mRNA profiles during the early phase of Paramecium bursaria chlorella virus-1 infection

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Evaluation of higher plant virus resistance genes in the green alga, Chlorella variabilis NC64A, during the early phase of infection with Paramecium bursaria chlorella virus-1

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Towards defining the chloroviruses: a genomic journey through a genus of large DNA viruses.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Paramecium bursaria chlorella virus 1 proteome reveals novel architectural and regulatory features of a giant virus.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Three-dimensional structure and function of the Paramecium bursaria chlorella virus capsid

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Initial Events Associated with Virus PBCV-1 Infection of Chlorella NC64A

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Simultaneous high-resolution analysis of vaccinia virus and host cell transcriptomes by deep RNA sequencing

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Microarray analysis of Paramecium bursaria chlorella virus 1 transcription

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

The polyadenylation site of Mimivirus transcripts obeys a stringent 'hairpin rule'.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Chlorella viruses prevent multiple infections by depolarizing the host membrane

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Chlorovirus-mediated membrane depolarization of Chlorella alters secondary active transport of solutes.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Putative gene promoter sequences in the chlorella viruses

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Sequence and annotation of the 288-kb ATCV-1 virus that infects an endosymbiotic chlorella strain of the heliozoon Acanthocystis turfacea

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Sequence and annotation of the 314-kb MT325 and the 321-kb FR483 viruses that infect Chlorella Pbi

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Phycodnaviruses: a peek at genetic diversity

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Potassium ion channels of Chlorella viruses cause rapid depolarization of host cells during infection.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Immediate early genes expressed in chlorovirus infections

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Vaccinia virus transcription

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Chlorella virus PBCV-1 encodes a homolog of the bacteriophage T4 UV damage repair gene denV

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Self-splicing group I introns in eukaryotic viruses

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Gain and loss of polyadenylation signals during evolution of green algae.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Chlorella virus PBCV-1 encodes a functional homospermidine synthase

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Analysis of 74 kb of DNA located at the right end of the 330-kb chlorella virus PBCV-1 genome

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Assembly site of the virus PBCV-1 in a Chlorella-like green alga: ultrastructural studies

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Infection of a Chlorella-like alga with the virus PBCV-1: transcriptional studies

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Transcription and sequence studies of a 4.3-kbp fragment from a ds-DNA eukaryotic algal virus

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

The termini of the chlorella virus PBCV-1 genome are identical 2.2-kbp inverted repeats

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

The DNA polymerase gene from chlorella viruses PBCV-1 and NY-2A contains an intron with nuclear splicing sequences.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Infection of a Chlorella-like alga with the virus, PBCV-1: ultrastructural studies

30 May 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0090989

Hyaluronan synthesis in virus PBCV-1-infected chlorella-like green algae

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0090989

Characterization of two chitinase genes and one chitosanase gene encoded by Chlorella virus PBCV-1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0090989

Growth cycle of a virus, PBCV-1, that infects Chlorella-like algae

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3946568

Chlorella viruses evoke a rapid release of K+ from host cells during the early phase of infection

29 November 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0090989

C-terminal repetitive motifs in Vp130 present at the unique vertex of the Chlorovirus capsid are essential for binding to the host Chlorella cell wall

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24608750

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0090989

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24608750%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

ADS bibcode

2014PLoSO...990989B

0 references

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24608750%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

PubMed publication ID

24608750

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24608750%20AND%20SRC:MED&resulttype=core&format=json