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Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in S. cerevisiae

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Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in S. cerevisiae (English)

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4

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Simon Tavaré

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Simon

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Tavaré

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Dimensions Publication ID

18 August 2022

Jennifer G Aparicio

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Jennifer G Aparicio

2

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Jennifer G

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Aparicio

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Dimensions Publication ID

18 August 2022

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Weihong Xu

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Weihong

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Xu

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Dimensions Publication ID

18 August 2022

Oscar M. Aparicio

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Oscar M Aparicio

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Oscar M

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Aparicio

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18 August 2022

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2006

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7

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276

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Creative Commons Attribution 2.0 Generic

26 October 2006

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April 2022 Public Data File from Crossref

Susceptibility to superhelically driven DNA duplex destabilization: a highly conserved property of yeast replication origins

1 reference

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19 March 2017

The requirement of yeast replication origins for pre-replication complex proteins is modulated by transcription

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19 March 2017

Prediction of Saccharomyces cerevisiae replication origins

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19 March 2017

Making sense of eukaryotic DNA replication origins

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19 March 2017

ATP bound to the origin recognition complex is important for preRC formation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

19 March 2017

Changes in association of the Xenopus origin recognition complex with chromatin on licensing of replication origins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

19 March 2017

Identification of a preinitiation step in DNA replication that is independent of origin recognition complex and cdc6, but dependent on cdk2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

19 March 2017

The structure and function of MCM from archaeal M. Thermoautotrophicum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

19 March 2017

Control of replication initiation and heterochromatin formation in Saccharomyces cerevisiae by a regulator of meiotic gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

19 March 2017

The Rpd3-Sin3 histone deacetylase regulates replication timing and enables intra-S origin control in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

19 March 2017

Histone acetylation regulates the time of replication origin firing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

19 March 2017

Identification of a multifunctional domain in autonomously replicating sequence-binding factor 1 required for transcriptional activation, DNA replication, and gene silencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

19 March 2017

Architecture of the yeast origin recognition complex bound to origins of DNA replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

19 March 2017

Components and dynamics of DNA replication complexes in S. cerevisiae: redistribution of MCM proteins and Cdc45p during S phase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

19 March 2017

Cdc6p-dependent loading of Mcm proteins onto pre-replicative chromatin in budding yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

19 March 2017

DNA replication in eukaryotic cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

19 March 2017

Genome-wide location and function of DNA binding proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

19 March 2017

ATP hydrolysis by ORC catalyzes reiterative Mcm2-7 assembly at a defined origin of replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

19 March 2017

The origin recognition complex: from simple origins to complex functions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

19 March 2017

A yeast chromosomal origin of DNA replication defined by multiple functional elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

19 March 2017

Genomic mapping of single-stranded DNA in hydroxyurea-challenged yeasts identifies origins of replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

12 September 2017

Transcription factors and DNA replication origin selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

12 September 2017

Right place, right time, and only once: replication initiation in metazoans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

12 September 2017

Specific signals at the 3' end of the DHFR gene define one boundary of the downstream origin of replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

12 September 2017

A genomic view of eukaryotic DNA replication.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

12 September 2017

Temporal profile of replication of human chromosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

12 September 2017

Eukaryotic origins of DNA replication: could you please be more specific?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

12 September 2017

The activities of eukaryotic replication origins in chromatin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

12 September 2017

A motif co-occurrence approach for genome-wide prediction of transcription-factor-binding sites in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

12 September 2017

Hexameric ring structure of the full-length archaeal MCM protein complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

12 September 2017

The 'ORC cycle': a novel pathway for regulating eukaryotic DNA replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

12 September 2017

Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

12 September 2017

Completion of replication map of Saccharomyces cerevisiae chromosome III.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

12 September 2017

BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

12 September 2017

Cdc6p modulates the structure and DNA binding activity of the origin recognition complex in vitro

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

12 September 2017

Activation of dormant origins of DNA replication in budding yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

12 September 2017

Activation of silent replication origins at autonomously replicating sequence elements near the HML locus in budding yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

12 September 2017

The ARS309 chromosomal replicator of Saccharomyces cerevisiae depends on an exceptional ARS consensus sequence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

12 September 2017

Ease of DNA unwinding is a conserved property of yeast replication origins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

12 September 2017

Transcription interferes with elements important for chromosome maintenance in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

12 September 2017

The structure and function of yeast ARS elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

27 September 2017

Evidence suggesting that the ARS elements associated with silencers of the yeast mating-type locus HML do not function as chromosomal DNA replication origins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

27 September 2017

Nucleosome positioning can affect the function of a cis-acting DNA element in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

27 September 2017

Genome-wide identification of replication origins in yeast by comparative genomics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

30 May 2018

The Chinese hamster dihydrofolate reductase replication origin decision point follows activation of transcription and suppresses initiation of replication within transcription units

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

30 May 2018

Coordination of replication and transcription along a Drosophila chromosome.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

30 May 2018

The effect on chromosome stability of deleting replication origins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

30 May 2018

Location and characterization of autonomously replicating sequences from chromosome VI of Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

30 May 2018

Tolerance of Sir1p/origin recognition complex-dependent silencing for enhanced origin firing at HMRa

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29 November 2018

LOGOS: a modular Bayesian model for de novo motif detection

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29 November 2018

Mitotic remodeling of the replicon and chromosome structure.

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29 November 2018

Progressive activation of DNA replication initiation in large domains of the immunoglobulin heavy chain locus during B cell development.

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29 November 2018

Chromatin regulates origin activity in Drosophila follicle cells

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29 November 2018

Metazoan origin selection: origin recognition complex chromatin binding is regulated by CDC6 recruitment and ATP hydrolysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1657020

29 November 2018

Mapping of early firing origins on a replication profile of budding yeast

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29 November 2018

Replication dynamics of the yeast genome.

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29 November 2018

Nucleosomes positioned by ORC facilitate the initiation of DNA replication.

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29 November 2018

ABFI contributes to the chromatin organization of Saccharomyces cerevisiae ARS1 B-domain

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https://pubmed.ncbi.nlm.nih.gov/17067396

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Replication profile of Saccharomyces cerevisiae chromosome VI

1 reference

https://pubmed.ncbi.nlm.nih.gov/17067396

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Replication of yeast rDNA initiates downstream of transcriptionally active genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/17067396

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A tutorial on hidden Markov models and selected applications in speech recognition

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https://api.crossref.org/works/10.1186%2F1471-2164-7-276

7 January 2021

based on heuristic

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10.1186/1471-2164-7-276

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

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1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-7-276

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PubMed publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

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