(Q21267180)

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Genome sequencing reveals diversification of virulence factor content and possible host adaptation in distinct subpopulations of Salmonella enterica

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21859443%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Genome sequencing reveals diversification of virulence factor content and possible host adaptation in distinct subpopulations of Salmonella enterica (English)

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21859443%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

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Salmonella enterica

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3

object named as

Gregory Govoni

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Gregory

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Govoni

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21859443%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Henk C den Bakker

1

object named as

Henk C den Bakker

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Henk C

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den Bakker

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21859443%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Martin Wiedmann

12

object named as

Martin Wiedmann

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Martin

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Wiedmann

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21859443%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Manohar R Furtado

11

object named as

Manohar R Furtado

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Manohar R

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Furtado

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21859443%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

author name string

Andrea I Moreno Switt

2

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Andrea I

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Moreno Switt

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21859443%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Craig A Cummings

4

author given names

Craig A

author last names

Cummings

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21859443%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Matthew L Ranieri

5

author given names

Matthew L

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Ranieri

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21859443%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Lovorka Degoricija

6

author given names

Lovorka

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Degoricija

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21859443%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Karin Hoelzer

7

author given names

Karin

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Hoelzer

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21859443%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Lorraine D Rodriguez-Rivera

8

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Lorraine D

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Rodriguez-Rivera

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21859443%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Stephanie Brown

9

author given names

Stephanie

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Brown

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21859443%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Elena Bolchacova

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author given names

Elena

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Bolchacova

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21859443%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

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publication date

22 August 2011

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21859443%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21859443%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

12

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21859443%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

1

0 references

425

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21859443%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

describes a project that uses

object named as

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Foodborne illness acquired in the United States--major pathogens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

19 March 2017

Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths

1 reference

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19 March 2017

The RAST Server: rapid annotations using subsystems technology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

19 March 2017

Versatile and open software for comparing large genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

19 March 2017

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

19 March 2017

Genome sequence of Yersinia pestis, the causative agent of plague

1 reference

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19 March 2017

Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies

1 reference

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19 March 2017

Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss

1 reference

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19 March 2017

BEAST: Bayesian evolutionary analysis by sampling trees

1 reference

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19 March 2017

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

19 March 2017

Inferring weak population structure with the assistance of sample group information

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

7 April 2017

Recombination and population structure in Salmonella enterica.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

12 September 2017

Substructure within Salmonella enterica subsp. enterica isolates from Australian wildlife

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

12 September 2017

Ecosystem-specific selection pressures revealed through comparative population genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

12 September 2017

Evolution and population structure of Salmonella enterica serovar Newport

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

12 September 2017

The genomes of the South American opossum (Monodelphis domestica) and platypus (Ornithorhynchus anatinus) encode a more complete purine catabolic pathway than placental mammals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

12 September 2017

So similar, yet so different: uncovering distinctive features in the genomes of Salmonella enterica serovars Typhimurium and Typhi.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

12 September 2017

Genome wide evolutionary analyses reveal serotype specific patterns of positive selection in selected Salmonella serotypes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

12 September 2017

Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

12 September 2017

Clinical pathogenesis of typhoid fever.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

12 September 2017

Salmonella paratyphi C: genetic divergence from Salmonella choleraesuis and pathogenic convergence with Salmonella typhi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

12 September 2017

Inference of bacterial microevolution using multilocus sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

12 September 2017

Evolutionary history of Salmonella typhi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

12 September 2017

Mismatch induced speciation in Salmonella: model and data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

12 September 2017

DNA sequence-based subtyping and evolutionary analysis of selected Salmonella enterica serotypes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

12 September 2017

The gusBC genes of Escherichia coli encode a glucuronide transport system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

12 September 2017

Characterization of Salmonella enterica subspecies I genovars by use of microarrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

12 September 2017

Carbon nutrition of Escherichia coli in the mouse intestine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

12 September 2017

Host adapted serotypes of Salmonella enterica

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

12 September 2017

Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

12 September 2017

A novel PhoP-regulated locus encoding the cytolysin ClyA and the secreted invasin TaiA of Salmonella enterica serovar Typhi is involved in virulence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

27 September 2017

Delivery of a Salmonella Typhi exotoxin from a host intracellular compartment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

27 September 2017

Comparison of the bacterial Enhancin-like proteins from Yersinia and Bacillus spp. with a baculovirus Enhancin.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

27 September 2017

Microbial comparative pan-genomics using binomial mixture models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

30 May 2018

A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: convergence or divergence by homologous recombination?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176500

30 May 2018

Supplement 2003-2007 (No. 47) to the White-Kauffmann-Le Minor scheme.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-425

21 January 2018

Standardization of pulsed-field gel electrophoresis protocols for the subtyping of Escherichia coli O157:H7, Salmonella, and Shigella for PulseNet.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-425

21 January 2018

Salmonella reference collection B (SARB): strains of 37 serovars of subspecies I.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-425

21 January 2018

Population structure of Salmonella investigated by amplified fragment length polymorphism.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-425

21 January 2018

Genotypic characterization of Salmonella by multilocus sequence typing, pulsed-field gel electrophoresis and amplified fragment length polymorphism.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-425

21 January 2018

Extended-spectrum beta-lactamase blaCTX-M-1 gene carried on an IncI1 plasmid in multidrug-resistant Salmonella enterica serovar Typhimurium DT104 in cattle in France.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-425

21 January 2018

Salmonella enterica serovar Typhi has a 4.1 kb genetic island inserted within the sapABCDF operon that causes loss of resistance to the antimicrobial peptide protamine.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-425

21 January 2018

The artAB genes encode a putative ADP-ribosyltransferase toxin homologue associated with Salmonella enterica serovar Typhimurium DT104.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-425

21 January 2018

Inference from Iterative Simulation Using Multiple Sequences

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-425

21 January 2018

GARD: a genetic algorithm for recombination detection

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-425

21 January 2018

Excretion of purine derivatives by ruminants: endogenous excretion, differences between cattle and sheep

1 reference

https://pubmed.ncbi.nlm.nih.gov/21859443

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pathogenesis of calcium bilirubinate gallstone: role of E. coli, beta-glucuronidase and coagulation by inorganic ions, polyelectrolytes and agitation

1 reference

https://pubmed.ncbi.nlm.nih.gov/21859443

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2164-12-425

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21859443%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Dimensions Publication ID

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-12-425

OpenCitations bibliographic resource ID

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Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

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Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21859443%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

PubMed publication ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21859443%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

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