(Q21267182)

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Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing

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Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing (English)

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1 reference

based on heuristic

inferred from title

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based on heuristic

inferred from title

Acacia auriculiformis

object named as

Acacia auriculiformis

1 reference

based on heuristic

inferred from title

object named as

Acacia mangium

1 reference

based on heuristic

inferred from title

Charles Harvey Cannon

2

object named as

Charles H Cannon

author given names

Charles H

author last names

Cannon

1 reference

Dimensions Publication ID

19 August 2022

author name string

Melissa M L Wong

1

author given names

Melissa ML

author last names

Wong

1 reference

Dimensions Publication ID

19 August 2022

Ratnam Wickneswari

3

author given names

Ratnam

author last names

Wickneswari

1 reference

Dimensions Publication ID

19 August 2022

language of work or name

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publication date

2011

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12

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1

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342

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describes a project that uses

object named as

MUMMER

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

19 March 2017

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

19 March 2017

miRBase: tools for microRNA genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

19 March 2017

SNP discovery via 454 transcriptome sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

19 March 2017

Versatile and open software for comparing large genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

19 March 2017

The genome of the cucumber, Cucumis sativus L

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

19 March 2017

Structural Basis for the Modulation of Lignin Monomer Methylation by Caffeic Acid/5-Hydroxyferulic Acid 3/5-O-Methyltransferase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

19 March 2017

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

19 March 2017

Sequencing technologies - the next generation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

19 March 2017

The Sequence Alignment/Map format and SAMtools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

19 March 2017

EMBOSS: the European Molecular Biology Open Software Suite

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

19 March 2017

The impact of next-generation sequencing technology on genetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

19 March 2017

Multiple sequence alignment using ClustalW and ClustalX

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

7 April 2017

De novo assembly of short sequence reads

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

12 September 2017

Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

12 September 2017

De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX Titanium platform to discover putative genes involved in ginsenoside biosynthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

12 September 2017

Survey of the transcriptome of Aspergillus oryzae via massively parallel mRNA sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

12 September 2017

One-step identification of conserved miRNAs, their targets, potential transcription factors and effector genes of complete secondary metabolism pathways after 454 pyrosequencing of calyx cDNAs from the Labiate Salvia sclarea L.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

12 September 2017

Transcriptional regulation of lignin biosynthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

12 September 2017

Global characterization of Artemisia annua glandular trichome transcriptome using 454 pyrosequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

12 September 2017

Next-generation sequencing technologies and their implications for crop genetics and breeding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

12 September 2017

Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

12 September 2017

High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

12 September 2017

Involvement of Pinus taeda MYB1 and MYB8 in phenylpropanoid metabolism and secondary cell wall biogenesis: a comparative in planta analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

12 September 2017

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

12 September 2017

Transcriptional regulation in wood formation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

12 September 2017

Gene discovery and annotation using LCM-454 transcriptome sequencing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

12 September 2017

Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

12 September 2017

Isolation and characterization of flower-specific transcripts in Acacia mangium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

12 September 2017

Characterisation of Pt MYB1, an R2R3-MYB from pine xylem.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

12 September 2017

Sequencing of natural strains of Arabidopsis thaliana with short reads

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

27 September 2017

Genomic and small RNA sequencing of Miscanthus x giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

30 May 2018

FrameDP: sensitive peptide detection on noisy matured sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

30 May 2018

Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-342

21 January 2018

Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-342

21 January 2018

Genome-wide characterization of the lignification toolbox in Arabidopsis

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-342

21 January 2018

Towards a systems approach for lignin biosynthesis in Populus trichocarpa: transcript abundance and specificity of the monolignol biosynthetic genes.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-342

21 January 2018

Identification of 4-coumarate:coenzyme A ligase (4CL) substrate recognition domains.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-342

21 January 2018

Conserved sequence motifs in plant S-adenosyl-L-methionine-dependent methyltransferases

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-342

21 January 2018

Molecular cloning and characterization of cDNAs encoding cinnamoyl CoA reductase (CCR) from barley (Hordeum vulgare) and potato (Solanum tuberosum).

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-342

21 January 2018

Purification, cloning, and properties of an acyltransferase controlling shikimate and quinate ester intermediates in phenylpropanoid metabolism

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-342

21 January 2018

The phenylalanine ammonia-lyase gene family in Arabidopsis thaliana.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-342

21 January 2018

PlnTFDB: updated content and new features of the plant transcription factor database

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-342

21 January 2018

Functional analysis of tobacco LIM protein Ntlim1 involved in lignin biosynthesis

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-342

21 January 2018

Involvement of the R2R3-MYB, AtMYB61, in the ectopic lignification and dark-photomorphogenic components of the det3 mutant phenotype.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-342

21 January 2018

The MYB46 transcription factor is a direct target of SND1 and regulates secondary wall biosynthesis in Arabidopsis.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-342

21 January 2018

A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in Arabidopsis.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-342

21 January 2018

EgMYB1, an R2R3 MYB transcription factor from eucalyptus negatively regulates secondary cell wall formation in Arabidopsis and poplar.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-342

21 January 2018

Down-regulation of the maize and Arabidopsis thaliana caffeic acid O-methyl-transferase genes by two new maize R2R3-MYB transcription factors.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-342

21 January 2018

Computational identification of microRNAs and their targets.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-342

21 January 2018

Identification and characterization of new plant microRNAs using EST analysis.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-342

21 January 2018

An approach to transcriptome analysis of non-model organisms using short-read sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161972

29 November 2018

Analysis of ESTs generated from inner bark tissue of an Acacia auriculiformis x Acacia mangium hybrid

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-342

21 January 2018

Repression of lignin biosynthesis promotes cellulose accumulation and growth in transgenic trees

1 reference

https://pubmed.ncbi.nlm.nih.gov/21729267

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ACACIA MANGIUM: A TROPICAL FOREST TREE OF THE COASTAL LOWLANDS WITH LOW GENETIC DIVERSITY.

1 reference

https://pubmed.ncbi.nlm.nih.gov/21729267

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A molecular model for cinnamyl alcohol dehydrogenase, a plant aromatic alcohol dehydrogenase involved in lignification

1 reference

https://pubmed.ncbi.nlm.nih.gov/21729267

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The AmMYB308 and AmMYB330 transcription factors from antirrhinum regulate phenylpropanoid and lignin biosynthesis in transgenic tobacco

1 reference

https://pubmed.ncbi.nlm.nih.gov/21729267

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2164-12-342

1 reference

Consolidated OpenCitations Corpus – April 2017

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OpenCitations bibliographic resource ID

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Consolidated OpenCitations Corpus – April 2017

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PMC publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

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1 reference

Consolidated OpenCitations Corpus – April 2017

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