(Q37781227)

23 August 2017

De novo assembly of short sequence reads (English)

1 reference

23 August 2017

David J Studholme

2

0 references

author name string

Konrad Paszkiewicz

series ordinal

1

1 reference

23 August 2017

19 August 2010

1 reference

Briefings in Bioinformatics

23 August 2017

1 reference

23 August 2017

11

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23 August 2017

457-472

1 reference

23 August 2017

5

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Next-generation DNA sequencing techniques

23 August 2017

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Applications of ultra-high-throughput sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Advanced sequencing technologies and their wider impact in microbiology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

The new paradigm of flow cell sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

De novo sequencing of plant genomes using second-generation technologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Application of 'next-generation' sequencing technologies to microbial genetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Next-generation DNA sequencing methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Sequencing technologies - the next generation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Applications of next-generation sequencing technologies in functional genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Next-generation sequencing technologies and their implications for crop genetics and breeding

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Accurate whole human genome sequencing using reversible terminator chemistry

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Whole-genome re-sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Sense from sequence reads: methods for alignment and assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Assembling genomes using short-read sequencing technology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Genome assembly reborn: recent computational challenges

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Bioinformatics challenges of new sequencing technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

High-throughput gene mapping in Caenorhabditis elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

The Atlas genome assembly system

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

A whole-genome assembly of Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

CAP3: A DNA sequence assembly program

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

De novo repeat classification and fragment assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

PCAP: a whole-genome assembly program

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

RePS: a sequence assembler that masks exact repeats identified from the shotgun data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

21 January 2018

The phusion assembler

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Genomic and small RNA sequencing of Miscanthus x giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

The genome of the cucumber, Cucumis sativus L

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163T and comparative genomic insights into plant pathogenicity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Large scale single nucleotide polymorphism discovery in unsequenced genomes using second generation high throughput sequencing technology: applied to turkey

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

The sequence and de novo assembly of the giant panda genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Whole genome assembly of a natto production strain Bacillus subtilis natto from very short read data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

A draft genome sequence and functional screen reveals the repertoire of type III secreted proteins of Pseudomonas syringae pathovar tabaci 11528

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Pseudomonas syringae strains naturally lacking the classical P. syringae hrp/hrc Locus are common leaf colonizers equipped with an atypical type III secretion system

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

A draft genome sequence of Pseudomonas syringae pv. tomato T1 reveals a type III effector repertoire significantly divergent from that of Pseudomonas syringae pv. tomato DC3000.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Comparative genome analysis provides insights into the evolution and adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

An analysis of the feasibility of short read sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Fragment assembly with short reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Assembly complexity of prokaryotic genomes using short reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

De novoassembly of thePseudomonas syringaepv.syringaeB728a genome using Illumina/Solexa short sequence reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

A large genome center's improvements to the Illumina sequencing system

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

An Eulerian path approach to DNA fragment assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Fragment assembly with double-barreled data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

ALLPATHS: de novo assembly of whole-genome shotgun microreads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

ABySS: a parallel assembler for short read sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

De novo fragment assembly with short mate-paired reads: Does the read length matter?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Short read fragment assembly of bacterial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Deep short-read sequencing of chromosome 17 from the mouse strains A/J and CAST/Ei identifies significant germline variation and candidate genes that regulate liver triglyceride levels

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

QSRA: a quality-value guided de novo short read assembler

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

De novo assembly of human genomes with massively parallel short read sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Assembling millions of short DNA sequences using SSAKE.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

A fast hybrid short read fragment assembly algorithm.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Extending assembly of short DNA sequences to handle error.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Pebble and rock band: heuristic resolution of repeats and scaffolding in the velvet short-read de novo assembler

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Minimus: a fast, lightweight genome assembler

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Scaffolding and validation of bacterial genome assemblies using optical restriction maps

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Whole-genome sequencing and assembly with high-throughput, short-read technologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Parallel, tag-directed assembly of locally derived short sequence reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

A new strategy for genome assembly using short sequence reads and reduced representation libraries

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

The long march: a sample preparation technique that enhances contig length and coverage by high-throughput short-read sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Beware of mis-assembled genomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Genome assembly forensics: finding the elusive mis-assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Tablet--next generation sequence assembly visualization

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

De novo transcriptome assembly with ABySS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Large-scale and automated DNA sequence determination

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Real-time DNA sequencing from single polymerase molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Mapping short DNA sequencing reads and calling variants using mapping quality scores

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Maximum likelihood genome assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

Decoding a national treasure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ020

21 January 2018

Identifiers

DOI

10.1093/BIB/BBQ020

1 reference

journals/bib/PaszkiewiczS10

23 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PubMed ID

20724458