(Q37623244)

21 August 2017

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title

Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing (English)

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21 August 2017

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8

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21 August 2017

Ernesto Picardi

7

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Michael Sammeth

object named as

Michael Sammeth

6

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author name string

David Stephen Horner

1

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21 August 2017

Giulio Pavesi

2

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21 August 2017

Tiziana Castrignanò

3

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21 August 2017

Paolo D'Onorio De Meo

4

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21 August 2017

Sabino Liuni

5

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21 August 2017

27 October 2009

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Briefings in Bioinformatics

21 August 2017

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21 August 2017

11

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21 August 2017

2

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21 August 2017

181-197

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DNA sequencing with chain-terminating inhibitors

21 August 2017

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https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Application of 'next-generation' sequencing technologies to microbial genetics

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

The impact of next-generation sequencing technology on genetics

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Next-generation DNA sequencing methods

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

New strategies and emerging technologies for massively parallel sequencing: applications in medical research

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Applications of next-generation sequencing technologies in functional genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

From cytogenetics to next-generation sequencing technologies: advances in the detection of genome rearrangements in tumors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Next-generation tag sequencing for cancer gene expression profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Next-generation DNA sequencing techniques

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Next-generation DNA sequencing

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

The Genome Sequencer FLX System--longer reads, more applications, straight forward bioinformatics and more complete data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Single-molecule DNA sequencing of a viral genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

The potential and challenges of nanopore sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Single-molecule DNA sequencing technologies for future genomics research

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Generations of sequencing technologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Basic local alignment search tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

How to map billions of short reads onto genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Bioinformatics for next generation sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

SeqMap: mapping massive amount of oligonucleotides to the genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

ZOOM! Zillions of oligos mapped

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

SOAP: short oligonucleotide alignment program

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

PASS: a program to align short sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

MOM: maximum oligonucleotide mapping

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

SOAP2: an improved ultrafast tool for short read alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Fast and accurate short read alignment with Burrows-Wheeler transform

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Mapping short DNA sequencing reads and calling variants using mapping quality scores

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Using quality scores and longer reads improves accuracy of Solexa read mapping

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

CloudBurst: highly sensitive read mapping with MapReduce

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

SHRiMP: accurate mapping of short color-space reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

The UCSC Genome Browser Database: update 2009

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

MetaSim: a sequencing simulator for genomics and metagenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Metagenomic pyrosequencing and microbial identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

The Atlas genome assembly system

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

High-throughput gene mapping in Caenorhabditis elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

PCAP: a whole-genome assembly program

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

21 January 2018

The phusion assembler

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

QSRA: a quality-value guided de novo short read assembler

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

ALLPATHS: de novo assembly of whole-genome shotgun microreads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Extending assembly of short DNA sequences to handle error.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Short read fragment assembly of bacterial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Assembling millions of short DNA sequences using SSAKE.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Genome assembly reborn: recent computational challenges

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Bioinformatics approaches and resources for single nucleotide polymorphism functional analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

A general approach to single-nucleotide polymorphism discovery.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Rapid whole-genome mutational profiling using next-generation sequencing technologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Slider--maximum use of probability information for alignment of short sequence reads and SNP detection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Pyrobayes: an improved base caller for SNP discovery in pyrosequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Large-scale mRNA sequencing determines global regulation of RNA editing during brain development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Alternative isoform regulation in human tissue transcriptomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

RNA-Seq: a revolutionary tool for transcriptomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

A hierarchical Bayesian model for comparing transcriptomes at the individual transcript isoform level

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Optimal spliced alignments of short sequence reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

TopHat: discovering splice junctions with RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

ASPicDB: a database resource for alternative splicing analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Annotating genomes with massive-scale RNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Evaluation of next generation sequencing platforms for population targeted sequencing studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

A large genome center's improvements to the Illumina sequencing system

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Chop it, ChIP it, check it: the current status of chromatin immunoprecipitation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

F-Seq: a feature density estimator for high-throughput sequence tags

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Genome-wide mapping of in vivo protein-DNA interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

An integrated software system for analyzing ChIP-chip and ChIP-seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

High-resolution profiling of histone methylations in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

MicroRNAs: genomics, biogenesis, mechanism, and function

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

21 January 2018

RNA silencing in plants

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Criteria for annotation of plant MicroRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

MicroRNA expression detected by oligonucleotide microarrays: system establishment and expression profiling in human tissues

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

A toolkit for analysing large-scale plant small RNA datasets.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

miRBase: microRNA sequences, targets and gene nomenclature

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

piRNABank: a web resource on classified and clustered Piwi-interacting RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

ASRP: the Arabidopsis Small RNA Project Database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Discovering microRNAs from deep sequencing data using miRDeep

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Expression profiling of microRNAs by deep sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

A slicer-mediated mechanism for repeat-associated siRNA 5' end formation in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Genomic patterns of DNA methylation: targets and function of an epigenetic mark

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

DNA methylation landscapes: provocative insights from epigenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Epigenetic inheritance in plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Finding the fifth base: genome-wide sequencing of cytosine methylation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Highly integrated single-base resolution maps of the epigenome in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

A perspective: metatranscriptomics as a tool for the discovery of novel biocatalysts.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

GENE SEQUENCING: The Race for the $1000 Genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP046

21 January 2018

Identifiers

DOI

10.1093/BIB/BBP046

1 reference

journals/bib/HornerPCMLSPP10

21 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference