(Q21267216)

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Generation and analysis of ESTs from strawberry (Fragaria xananassa) fruits and evaluation of their utility in genetic and molecular studies

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14 February 2020

Generation and analysis of ESTs from strawberry (Fragaria xananassa) fruits and evaluation of their utility in genetic and molecular studies (English)

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Europe PubMed Central

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14 February 2020

Aureliano Bombarely

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Aureliano Bombarely

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Aureliano

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Bombarely

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14 February 2020

Catharina Merchante

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Catharina Merchante

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Catharina

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Merchante

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14 February 2020

Fabiana Csukasi

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14 February 2020

José L Caballero

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José L Caballero

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José L

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Caballero

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14 February 2020

Rosario Blanco-Portales

7

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Rosario Blanco-Portales

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Rosario

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Blanco-Portales

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14 February 2020

Miguel A. Botella

8

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Miguel A Botella

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Miguel A

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Botella

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14 February 2020

Juan Muñoz Blanco

9

object named as

Juan Muñoz-Blanco

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Juan

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Muñoz-Blanco

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14 February 2020

José F Sánchez-Sevilla

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José F Sánchez-Sevilla

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José F

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Sánchez-Sevilla

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14 February 2020

Victoriano Valpuesta

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Victoriano Valpuesta

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Victoriano

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Valpuesta

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14 February 2020

Nieves Medina-Escobar

6

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Nieves

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Medina-Escobar

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Nieves Medina-Escobar

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14 February 2020

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Eduardo Cruz-Rus

4

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Eduardo

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Cruz-Rus

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14 February 2020

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17 September 2010

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14 February 2020

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14 February 2020

11

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14 February 2020

503

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14 February 2020

1

0 references

https://scigraph.springernature.com/pub.10.1186/1471-2164-11-503

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-11-503

Expressed sequence tags (ESTs) and simple sequence repeat (SSR) markers from octoploid strawberry (Fragaria x ananassa).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

19 March 2017

The defH9-iaaM auxin-synthesizing gene increases plant fecundity and fruit production in strawberry and raspberry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

19 March 2017

The roles of auxin response factor domains in auxin-responsive transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

19 March 2017

Berry fruits: compositional elements, biochemical activities, and the impact of their intake on human health, performance, and disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

19 March 2017

Gain and loss of fruit flavor compounds produced by wild and cultivated strawberry species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

19 March 2017

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

7 April 2017

TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

7 April 2017

Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

7 April 2017

Heat shock factor gene family in rice: genomic organization and transcript expression profiling in response to high temperature, low temperature and oxidative stresses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

Identification of new up-regulated genes under drought stress in soybean nodules.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

Comparative genetic mapping between octoploid and diploid Fragaria species reveals a high level of colinearity between their genomes and the essentially disomic behavior of the cultivated octoploid strawberry.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

Multiple models for Rosaceae genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

Auxin: the looping star in plant development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

MELOGEN: an EST database for melon functional genomics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

A soybean transcript map: gene distribution, haplotype and single-nucleotide polymorphism analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

Brassinosteroids regulate dissociation of BKI1, a negative regulator of BRI1 signaling, from the plasma membrane

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

Sl-ERF2, a tomato ethylene response factor involved in ethylene response and seed germination.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

Analyses of expressed sequence tags from apple.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

FaQR, required for the biosynthesis of the strawberry flavor compound 4-hydroxy-2,5-dimethyl-3(2H)-furanone, encodes an enone oxidoreductase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

An enhanced microsatellite map of diploid Fragaria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

Characterizing the grape transcriptome. Analysis of expressed sequence tags from multiple Vitis species and development of a compendium of gene expression during berry development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

It runs in the family: regulation of brassinosteroid signaling by the BZR1-BES1 class of transcription factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

Development of a citrus genome-wide EST collection and cDNA microarray as resources for genomic studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

Comprehensive EST analysis of tomato and comparative genomics of fruit ripening

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

Pectin esterase gene family in strawberry fruit: study of FaPE1, a ripening-specific isoform

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

The GSK3-like kinase BIN2 phosphorylates and destabilizes BZR1, a positive regulator of the brassinosteroid signaling pathway in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

Cellular mechanisms for heavy metal detoxification and tolerance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

beta-Galactosidases with a lectin-like domain are expressed in strawberry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

An expansin gene expressed in ripening strawberry fruit

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

The TIGR gene indices: reconstruction and representation of expressed gene sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

A novel E-type endo-beta-1,4-glucanase with a putative cellulose-binding domain is highly expressed in ripening strawberry fruits

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

Cloning, molecular characterization and expression pattern of a strawberry ripening-specific cDNA with sequence homology to pectate lyase from higher plants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

Cloning and characterization of cDNAs from genes differentially expressed during the strawberry fruit ripening process by a MAST-PCR-SBDS method.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

Molecular characterization of cDNAs corresponding to genes expressed during almond (Prunus amygdalus Batsch) seed development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

12 September 2017

Genome-wide analysis of the ERF gene family in Arabidopsis and rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

27 September 2017

Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

27 September 2017

Cloning and molecular characterization of a strawberry fruit ripening-related cDNA corresponding a mRNA for a low-molecular-weight heat-shock protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

30 May 2018

Reconfiguration of the achene and receptacle metabolic networks during strawberry fruit development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

29 November 2018

Auxin-induced fruit-set in tomato is mediated in part by gibberellins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

29 November 2018

MdERFs, two ethylene-response factors involved in apple fruit ripening

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

29 November 2018

The strawberry gene FaGAST affects plant growth through inhibition of cell elongation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

29 November 2018

Two-phase flavonoid formation in developing strawberry (Fragaria x ananassa) fruit

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

29 November 2018

Grapes on steroids. Brassinosteroids are involved in grape berry ripening

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

29 November 2018

Transcriptome and selected metabolite analyses reveal multiple points of ethylene control during tomato fruit development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

29 November 2018

AUXIN RESPONSE FACTOR1 and AUXIN RESPONSE FACTOR2 regulate senescence and floral organ abscission in Arabidopsis thaliana.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

29 November 2018

Different ethylene receptors show an increased expression during the ripening of strawberries: does such an increment imply a role for ethylene in the ripening of these non-climacteric fruits?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

29 November 2018

Identification and characterization of new plant microRNAs using EST analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

29 November 2018

Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

29 November 2018

Cloning and characterization of two ripening-related strawberry (Fragaria x ananassa cv. Chandler) pectate lyase genes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

29 November 2018

Engineering increased vitamin C levels in plants by overexpression of a D-galacturonic acid reductase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

29 November 2018

Acceleration of ripening of tomato pericarp discs by brassinosteroids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

29 November 2018

Down-regulation of DR12, an auxin-response-factor homolog, in the tomato results in a pleiotropic phenotype including dark green and blotchy ripening fruit.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

29 November 2018

Novel insight into vascular, stress, and auxin-dependent and -independent gene expression programs in strawberry, a non-climacteric fruit.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

29 November 2018

Identification of the SAAT gene involved in strawberry flavor biogenesis by use of DNA microarrays.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996999

29 November 2018

Free Auxins and Free Tryptophane in the Strawberry

1 reference

https://pubmed.ncbi.nlm.nih.gov/20849591

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Partial demethylation of oligogalacturonides by pectin methyl esterase 1 is required for eliciting defence responses in wild strawberry (Fragaria vesca)

1 reference

https://pubmed.ncbi.nlm.nih.gov/20849591

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of 2,5-dimethyl-4-hydroxy-3[2H]-furanone beta-D-glucuronide as the major metabolite of a strawberry flavour constituent in humans

1 reference

https://pubmed.ncbi.nlm.nih.gov/20849591

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Hormonal regulation of ripening in the strawberry, a non-climacteric fruit

1 reference

https://pubmed.ncbi.nlm.nih.gov/20849591

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Up- and down-regulation of Fragaria x ananassa O-methyltransferase: impacts on furanone and phenylpropanoid metabolism

1 reference

https://pubmed.ncbi.nlm.nih.gov/20849591

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Differential expression of a senescence-enhanced metallothionein gene in Arabidopsis in response to isolates of Peronospora parasitica and Pseudomonas syringae

1 reference

https://pubmed.ncbi.nlm.nih.gov/20849591

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Isolation of nucleic acids from plants by differential solvent precipitation

1 reference

https://pubmed.ncbi.nlm.nih.gov/20849591

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2164-11-503

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20849591%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Dimensions Publication ID

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-11-503

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20849591%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20849591%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

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