(Q21267218)

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The genome of Geobacter bemidjiensis, exemplar for the subsurface clade of Geobacter species that predominate in Fe(III)-reducing subsurface environments

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The genome of Geobacter bemidjiensis, exemplar for the subsurface clade of Geobacter species that predominate in Fe(III)-reducing subsurface environments (English)

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Geobacter bemidjiensis

object named as

Geobacter bemidjiensis

1 reference

based on heuristic

inferred from title

object named as

Cliff S Han

7

author given names

Cliff S

author last names

Han

1 reference

Dimensions Publication ID

25 August 2022

object named as

Miriam L Land

8

author given names

Miriam L

author last names

Land

1 reference

Dimensions Publication ID

25 August 2022

Derek R. Lovley

9

object named as

Derek R Lovley

author given names

Derek R

author last names

Lovley

1 reference

Dimensions Publication ID

25 August 2022

3

object named as

Dawn Holmes

author given names

Dawn

author last names

Holmes

1 reference

Dimensions Publication ID

25 August 2022

author name string

Muktak Aklujkar

1

author given names

Muktak

author last names

Aklujkar

1 reference

Dimensions Publication ID

25 August 2022

Nelson D Young

2

author given names

Nelson D

author last names

Young

1 reference

Dimensions Publication ID

25 August 2022

Milind Chavan

4

author given names

Milind

author last names

Chavan

1 reference

Dimensions Publication ID

25 August 2022

Carla Risso

5

author given names

Carla

author last names

Risso

1 reference

Dimensions Publication ID

25 August 2022

Hajnalka E Kiss

6

author given names

Hajnalka E

author last names

Kiss

1 reference

Dimensions Publication ID

25 August 2022

language of work or name

0 references

publication date

2010

0 references

0 references

11

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1

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490

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The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens

1 reference

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19 March 2017

Decarboxylating and nondecarboxylating glutaryl-coenzyme A dehydrogenases in the aromatic metabolism of obligately anaerobic bacteria

1 reference

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19 March 2017

RNAmmer: consistent and rapid annotation of ribosomal RNA genes

1 reference

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19 March 2017

TRAP transporters: a new family of periplasmic solute transport systems encoded by the dctPQM genes of Rhodobacter capsulatus and by homologs in diverse gram-negative bacteria

1 reference

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19 March 2017

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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19 March 2017

Sequence analysis of a mannitol dehydrogenase cDNA from plants reveals a function for the pathogenesis-related protein ELI3

1 reference

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19 March 2017

Geobacter sulfurreducens sp. nov., a hydrogen- and acetate-oxidizing dissimilatory metal-reducing microorganism

1 reference

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19 March 2017

Genome of Geobacter sulfurreducens: Metal Reduction in Subsurface Environments

1 reference

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19 March 2017

Basic local alignment search tool

1 reference

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19 March 2017

CcpA from Geobacter sulfurreducens is a basic di-heme cytochrome c peroxidase

1 reference

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19 March 2017

Structural and biochemical analyses of YvgN and YtbE fromBacillus subtilis

1 reference

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19 March 2017

ProtTest: selection of best-fit models of protein evolution

1 reference

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19 March 2017

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

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19 March 2017

MrBayes 3: Bayesian phylogenetic inference under mixed models

1 reference

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19 March 2017

T-Coffee: A novel method for fast and accurate multiple sequence alignment

1 reference

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19 March 2017

Consed: a graphical tool for sequence finishing

1 reference

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19 March 2017

Base-calling of automated sequencer traces using phred. II. Error probabilities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

19 March 2017

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

19 March 2017

Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

19 March 2017

The glucose kinase gene of Streptomyces coelicolor A3(2): its nucleotide sequence, transcriptional analysis and role in glucose repression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

19 March 2017

Properties of an alpha-galactosidase, and structure of its gene galA, within an alpha-and beta-galactoside utilization gene cluster of the hyperthermophilic bacterium Thermotoga maritima

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

19 March 2017

Dissimilatory Fe(III) and Mn(IV) reduction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

19 March 2017

Prodigal: prokaryotic gene recognition and translation initiation site identification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

7 April 2017

Riboswitches in eubacteria sense the second messenger cyclic di-GMP

1 reference

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7 April 2017

The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

1 reference

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7 April 2017

Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

12 September 2017

Identification and characterization of the tungsten-containing class of benzoyl-coenzyme A reductases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

12 September 2017

Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens

1 reference

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12 September 2017

Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

12 September 2017

Anode biofilm transcriptomics reveals outer surface components essential for high density current production in Geobacter sulfurreducens fuel cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

12 September 2017

Genome-scale constraint-based modeling of Geobacter metallireducens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

12 September 2017

Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

12 September 2017

Genomic and microarray analysis of aromatics degradation in Geobacter metallireducens and comparison to a Geobacter isolate from a contaminated field site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

12 September 2017

Flux analysis of central metabolic pathways in Geobacter metallireducens during reduction of soluble Fe(III)-nitrilotriacetic acid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

12 September 2017

The NsrR regulon of Escherichia coli K-12 includes genes encoding the hybrid cluster protein and the periplasmic, respiratory nitrite reductase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

12 September 2017

Genes, enzymes, and regulation of para-cresol metabolism in Geobacter metallireducens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

12 September 2017

Importance of c-Type cytochromes for U(VI) reduction by Geobacter sulfurreducens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

12 September 2017

Geobacter bemidjiensis sp. nov. and Geobacter psychrophilus sp. nov., two novel Fe(III)-reducing subsurface isolates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

12 September 2017

Characterization of citrate synthase from Geobacter sulfurreducens and evidence for a family of citrate synthases similar to those of eukaryotes throughout the Geobacteraceae.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

12 September 2017

OmcF, a putative c-Type monoheme outer membrane cytochrome required for the expression of other outer membrane cytochromes in Geobacter sulfurreducens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

12 September 2017

Dissimilatory Fe(III) and Mn(IV) reduction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

12 September 2017

OmcB, a c-type polyheme cytochrome, involved in Fe(III) reduction in Geobacter sulfurreducens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

12 September 2017

Purification and catalytic properties of a CO-oxidizing:H2-evolving enzyme complex from Carboxydothermus hydrogenoformans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

12 September 2017

Genetic control of manno(fructo)kinase activity in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

12 September 2017

Development of a genetic system for Geobacter sulfurreducens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

12 September 2017

The sodium ion translocating glutaconyl-CoA decarboxylase from Acidaminococcus fermentans: cloning and function of the genes forming a second operon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

12 September 2017

Studies on the redox centers of the terminal oxidase from Desulfovibrio gigas and evidence for its interaction with rubredoxin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

12 September 2017

Molecular characterization of glucokinase from Escherichia coli K-12.

1 reference

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12 September 2017

Overproduction of the rbo gene product from Desulfovibrio species suppresses all deleterious effects of lack of superoxide dismutase in Escherichia coli

1 reference

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12 September 2017

Cloning, sequencing and expression of the gene encoding the carboxytransferase subunit of the biotin-dependent Na+ pump glutaconyl-CoA decarboxylase from Acidaminococcus fermentans in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

12 September 2017

Genetic and biochemical analysis of the isoenzymes concerned in the first reaction of aromatic biosynthesis in Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

12 September 2017

Structure of the galactokinase gene of Escherichia coli, the last (?) gene of the gal operon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

12 September 2017

Nucleotide sequence and deduced amino acid sequence of Escherichia coli pyruvate oxidase, a lipid-activated flavoprotein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

12 September 2017

Cloning and DNA sequence analysis of the mercury resistance genes of Streptomyces lividans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

12 September 2017

Outer membrane c-type cytochromes required for Fe(III) and Mn(IV) oxide reduction in Geobacter sulfurreducens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

27 September 2017

Potential for quantifying expression of the Geobacteraceae citrate synthase gene to assess the activity of Geobacteraceae in the subsurface and on current-harvesting electrodes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

27 September 2017

MacA, a diheme c-type cytochrome involved in Fe(III) reduction by Geobacter sulfurreducens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

27 September 2017

Carbon monoxide cycling by Desulfovibrio vulgaris Hildenborough

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

27 September 2017

Two isofunctional nitric oxide reductases in Alcaligenes eutrophus H16.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

27 September 2017

Utilization of orotate as a pyrimidine source by Salmonella typhimurium and Escherichia coli requires the dicarboxylate transport protein encoded by dctA.

1 reference

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27 September 2017

Modeling and sensitivity analysis of electron capacitance for Geobacter in sedimentary environments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

30 May 2018

Biochemical and genetic characterization of PpcA, a periplasmic c-type cytochrome in Geobacter sulfurreducens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

30 May 2018

Primary structure of the 5 S subunit of transcarboxylase as deduced from the genomic DNA sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

30 May 2018

Organization and function of the YsiA regulon of Bacillus subtilis involved in fatty acid degradation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

29 November 2018

Cyclohexa-1,5-diene-1-carbonyl-coenzyme A (CoA) hydratases of Geobacter metallireducens and Syntrophus aciditrophicus: Evidence for a common benzoyl-CoA degradation pathway in facultative and strict anaerobes

1 reference

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29 November 2018

The role of the hybrid cluster protein in oxidative stress defense.

1 reference

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29 November 2018

Succinate dehydrogenase functioning by a reverse redox loop mechanism and fumarate reductase in sulphate-reducing bacteria

1 reference

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29 November 2018

Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

29 November 2018

Gene clusters involved in anaerobic benzoate degradation of Geobacter metallireducens.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

29 November 2018

Glycolaldehyde-forming route in Bacillus subtilis in relation to vitamin B6 biosynthesis

1 reference

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29 November 2018

Characterization of isocitrate dehydrogenase from the green sulfur bacterium Chlorobium limicola. A carbon dioxide-fixing enzyme in the reductive tricarboxylic acid cycle

1 reference

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29 November 2018

Putative ACP phosphodiesterase gene (acpD) encodes an azoreductase

1 reference

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29 November 2018

The use of biologically produced ferrihydrite for the isolation of novel iron-reducing bacteria

1 reference

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29 November 2018

Brucella abortus strain 2308 putative glucose and galactose transporter gene: cloning and characterization

1 reference

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29 November 2018

Cloning and sequencing of trehalose synthase gene from Thermus aquaticus ATCC33923.

1 reference

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29 November 2018

The sodium ion translocating oxalacetate decarboxylase of Klebsiella pneumoniae. Sequence of the biotin-containing alpha-subunit and relationship to other biotin-containing enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996986

29 November 2018

Molecular analysis of phosphate limitation in Geobacteraceae during the bioremediation of a uranium-contaminated aquifer

1 reference

https://pubmed.ncbi.nlm.nih.gov/20828392

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Glucose kinase of Streptomyces coelicolor A3(2): large-scale purification and biochemical analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/20828392

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The structure of the core region of the lipopolysaccharide from Geobacter sulfurreducens

1 reference

https://pubmed.ncbi.nlm.nih.gov/20828392

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Investigation of direct vs. indirect involvement of the c-type cytochrome MacA in Fe(III) reduction by Geobacter sulfurreducens

1 reference

https://pubmed.ncbi.nlm.nih.gov/20828392

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A hemerythrin-like domain in a bacterial chemotaxis protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/20828392

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1186/1471-2164-11-490

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9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-11-490

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