(Q33288195)

English

Genomic and microarray analysis of aromatics degradation in Geobacter metallireducens and comparison to a Geobacter isolate from a contaminated field site

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scholarly article

1 reference

Europe PubMed Central

25 July 2017

Genomic and microarray analysis of aromatics degradation in Geobacter metallireducens and comparison to a Geobacter isolate from a contaminated field site (English)

1 reference

Europe PubMed Central

25 July 2017

Geobacter metallireducens

object named as

Geobacter metallireducens

1 reference

based on heuristic

inferred from title

Jessica E Butler

object named as

Jessica E Butler

1

0 references

object named as

Qiang He

2

0 references

object named as

Zhili He

4

0 references

Derek R. Lovley

6

object named as

Derek R Lovley

1 reference

Europe PubMed Central

25 July 2017

3

object named as

Kelly P Nevin

1 reference

Europe PubMed Central

25 July 2017

5

object named as

Jizhong Zhou

1 reference

Europe PubMed Central

25 July 2017

language of work or name

0 references

publication date

19 June 2007

1 reference

Europe PubMed Central

25 July 2017

1 reference

Europe PubMed Central

25 July 2017

8

1 reference

Europe PubMed Central

25 July 2017

180

1 reference

Europe PubMed Central

25 July 2017

https://scigraph.springernature.com/pub.10.1186/1471-2164-8-180

0 references

Energetic consequences of nitrite stress in Desulfovibrio vulgaris Hildenborough, inferred from global transcriptional analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Dearomatizing benzene ring reductases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

ISfinder: the reference centre for bacterial insertion sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Anaerobic Oxidation of Toluene, Phenol, and p-Cresol by the Dissimilatory Iron-Reducing Organism, GS-15

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Potential for quantifying expression of the Geobacteraceae citrate synthase gene to assess the activity of Geobacteraceae in the subsurface and on current-harvesting electrodes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Functional genomics of an anaerobic aromatic-degrading denitrifying bacterium, strain EbN1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Empirical establishment of oligonucleotide probe design criteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Growth of Geobacter sulfurreducens under nutrient-limiting conditions in continuous culture

1 reference

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28 July 2018

1 reference

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28 July 2018

InterPro, progress and status in 2005

1 reference

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28 July 2018

The Universal Protein Resource (UniProt)

1 reference

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28 July 2018

In situ expression of nifD in Geobacteraceae in subsurface sediments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

The genome sequence of an anaerobic aromatic-degrading denitrifying bacterium, strain EbN1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Phenylphosphate synthase: a new phosphotransferase catalyzing the first step in anaerobic phenol metabolism in Thauera aromatica

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Global transcriptome analysis of the heat shock response of Shewanella oneidensis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

PSORTb v.2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Bacterial degradation of aromatic pollutants: a paradigm of metabolic versatility

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Dehydration of (R)-2-hydroxyacyl-CoA to enoyl-CoA in the fermentation of alpha-amino acids by anaerobic bacteria

1 reference

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28 July 2018

The bzd gene cluster, coding for anaerobic benzoate catabolism, in Azoarcus sp. strain CIB

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Change in bacterial community structure during in situ biostimulation of subsurface sediment cocontaminated with uranium and nitrate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment

1 reference

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28 July 2018

Phenylphosphate carboxylase: a new C-C lyase involved in anaerobic phenol metabolism in Thauera aromatica

1 reference

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28 July 2018

Genomic islands in pathogenic and environmental microorganisms

1 reference

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28 July 2018

Cleaning up with genomics: applying molecular biology to bioremediation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Selenocysteine-containing proteins in anaerobic benzoate metabolism of Desulfococcus multivorans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Anaerobic degradation of monoaromatic hydrocarbons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Enumeration and characterization of iron(III)-reducing microbial communities from acidic subsurface sediments contaminated with uranium(VI)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Evolution of a chlorobenzene degradative pathway among bacteria in a contaminated groundwater mediated by a genomic island in Ralstonia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Metabolic diversity in aromatic compound utilization by anaerobic microbes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Properties of 2-oxoglutarate:ferredoxin oxidoreductase from Thauera aromatica and its role in enzymatic reduction of the aromatic ring

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Benzoate fermentation by the anaerobic bacterium Syntrophus aciditrophicus in the absence of hydrogen-using microorganisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Relationships between microbial community structure and hydrochemistry in a landfill leachate-polluted aquifer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Oxidation of acetate through reactions of the citric acid cycle by Geobacter sulfurreducens in pure culture and in syntrophic coculture.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Genes involved in anaerobic metabolism of phenol in the bacterium Thauera aromatica

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Lateral gene transfer and the nature of bacterial innovation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Comparative genomics of the eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Organization and sequences of p-hydroxybenzaldehyde dehydrogenase and other plasmid-encoded genes for early enzymes of the p-cresol degradative pathway in Pseudomonas putida NCIMB 9866 and 9869.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Microbial communities associated with anaerobic benzene degradation in a petroleum-contaminated aquifer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Bacterial catabolic transposons

1 reference

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28 July 2018

Formaldehyde ferredoxin oxidoreductase from Pyrococcus furiosus: the 1.85 A resolution crystal structure and its mechanistic implications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Genes coding for the benzoyl-CoA pathway of anaerobic aromatic metabolism in the bacterium Thauera aromatica

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Insertion sequences

1 reference

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28 July 2018

4-Hydroxybenzoyl-CoA reductase (dehydroxylating) from the denitrifying bacterium Thauera aromatica--prosthetic groups, electron donor, and genes of a member of the molybdenum-flavin-iron-sulfur proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

1 reference

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28 July 2018

A genomic perspective on protein families

1 reference

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28 July 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

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28 July 2018

Pathogenicity islands of virulent bacteria: structure, function and impact on microbial evolution

1 reference

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28 July 2018

Amelioration of bacterial genomes: rates of change and exchange

1 reference

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28 July 2018

Anaerobic metabolism of aromatic compounds

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Shedding light on anaerobic benzene ring degradation: a process unique to prokaryotes?

1 reference

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28 July 2018

Benzoyl-coenzyme A reductase (dearomatizing), a key enzyme of anaerobic aromatic metabolism. ATP dependence of the reaction, purification and some properties of the enzyme from Thauera aromatica strain K172

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924859

28 July 2018

Geobacter metallireducens gen. nov. sp. nov., a microorganism capable of coupling the complete oxidation of organic compounds to the reduction of iron and other metals

1 reference

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28 July 2018

Structure of a hyperthermophilic tungstopterin enzyme, aldehyde ferredoxin oxidoreductase

1 reference

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28 July 2018

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28 July 2018

Regulation of the acetate operon in Escherichia coli: purification and functional characterization of the IclR repressor

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28 July 2018

Acetate catabolism in the dissimilatory iron-reducing isolate GS-15.

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28 July 2018

Gene clusters involved in anaerobic benzoate degradation of Geobacter metallireducens.

1 reference

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31 October 2018

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31 October 2018

Genomic islands and the evolution of catabolic pathways in bacteria

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31 October 2018

Complete sequence of the IncP-9 TOL plasmid pWW0 from Pseudomonas putida

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31 October 2018

Transcriptional and proteomic analysis of a ferric uptake regulator (fur) mutant of Shewanella oneidensis: possible involvement of fur in energy metabolism, transcriptional regulation, and oxidative stress

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31 October 2018

Metabolism of benzoate, cyclohex-1-ene carboxylate, and cyclohexane carboxylate by "Syntrophus aciditrophicus" strain SB in syntrophic association with H(2)-using microorganisms

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31 October 2018

Crystal structure of the Acidaminococcus fermentans 2-hydroxyglutaryl-CoA dehydratase component A

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31 October 2018

EMBOSS: the European Molecular Biology Open Software Suite

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31 October 2018

2-hydroxyglutaryl-CoA dehydratase from Clostridium symbiosum.

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31 October 2018

Distribution and Composition of Microbial Populations in a Landfill Leachate Contaminated Aquifer (Grindsted, Denmark).

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31 October 2018

Comparative DNA analysis across diverse genomes.

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31 October 2018

Evidence for microbial iron reduction in a landfill leachate-polluted aquifer (Vejen, Denmark).

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31 October 2018

Genetic clues on the evolution of anaerobic catabolism of aromatic compounds

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12 December 2020

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Enrichment of Geobacter Species in Response to Stimulation of Fe(III) Reduction in Sandy Aquifer Sediments

1 reference

https://pubmed.ncbi.nlm.nih.gov/17578578

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Development of a PCR method for the detection and quantification of benzoyl-CoA reductase genes and its application to monitored natural attenuation

1 reference

https://pubmed.ncbi.nlm.nih.gov/17578578

12 December 2020

based on heuristic

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Identification and characterization of the natural electron donor ferredoxin and of FAD as a possible prosthetic group of benzoyl-CoA reductase (dearomatizing), a key enzyme of anaerobic aromatic metabolism

1 reference

https://pubmed.ncbi.nlm.nih.gov/17578578

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2164-8-180

1 reference

Europe PubMed Central

25 July 2017

Dimensions Publication ID

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-8-180

9 September 2019

1 reference

Europe PubMed Central

25 July 2017

1 reference

Europe PubMed Central

25 July 2017

ResearchGate publication ID

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