(Q21563325)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19165336%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

title

Multiple chromosomal rearrangements structured the ancestral vertebrate Hox-bearing protochromosomes (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19165336%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

1

Vincent J Lynch

Vincent J

Lynch

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19165336%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

2

Günter P Wagner

Günter P

Wagner

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19165336%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

language of work or name

English

0 references

publication date

23 January 2009

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19165336%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19165336%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

volume

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19165336%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19165336%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

page(s)

e1000349

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19165336%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

20 January 2020

copyright license

start time

23 January 2009

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Two rounds of whole genome duplication in the ancestral vertebrate

1 reference

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19 March 2017

1 reference

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

19 March 2017

1 reference

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Were vertebrates octoploid?

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

Extensive genomic duplication during early chordate evolution

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

19 March 2017

1 reference

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MRBAYES: Bayesian inference of phylogenetic trees

19 March 2017

1 reference

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Consequences of genome duplication

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

Likelihood-based tests of topologies in phylogenetics

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

The Dlx gene complement of the leopard shark, Triakis semifasciata, resembles that of mammals: implications for genomic and morphological evolution of jawed vertebrates

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

Pattern and timing of gene duplication in animal genomes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

Ancient genome duplications did not structure the human Hox-bearing chromosomes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

Evolution of Antennapedia-class homeobox genes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

An approximately unbiased test of phylogenetic tree selection

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

CONSEL: for assessing the confidence of phylogenetic tree selection

7 April 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

7 April 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

Positive selection near an inversion breakpoint on the neo-X chromosome of Drosophila americana

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

Adaptive evolution of Hox-gene homeodomains after cluster duplications

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

Reconstruction of a 450-My-old ancestral vertebrate protokaryotype.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

Chromosomal locus rearrangements are a rapid response to formation of the allotetraploid Arabidopsis suecica genome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

The fine-scale structure of recombination rate variation in the human genome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

Hox cluster duplications and the opportunity for evolutionary novelties

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

Phylogeny estimation: traditional and Bayesian approaches

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

The human Hox-bearing chromosome regions did arise by block or chromosome (or even genome) duplications

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

A physical map of the mouse genome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

Chromosome evolution in the Salmonidae (Pisces): an update

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

Lamprey Dlx genes and early vertebrate evolution

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

Gene and genome duplications in vertebrates: the one-to-four (-to-eight in fish) rule and the evolution of novel gene functions

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

Phylogenies of developmentally important proteins do not support the hypothesis of two rounds of genome duplication early in vertebrate history

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

Emerging patterns of comparative genome organization in some mammalian species as revealed by Zoo-FISH.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

Reconstruction of ancient molecular phylogeny

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

Evolution of the vertebrate genome as reflected in paralogous chromosomal regions in man and the house mouse

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

Evolution of a regulatory gene family: HOM/HOX genes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

The temporal distribution of gene duplication events in a set of highly conserved human gene families

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

Phylogenetic tests of the hypothesis of block duplication of homologous genes on human chromosomes 6, 9, and 1.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2622764

Evolutionary patterns of gene families generated in the early stage of vertebrates

30 May 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000349

Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000349

2R or not 2R: testing hypotheses of genome duplication in early vertebrates.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000349

Phylogenetic reconstruction of vertebrate Hox cluster duplications.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000349

Outgroup misplacement and phylogenetic inaccuracy under a molecular clock--a simulation study.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000349

A review of long-branch attraction

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000349

Homeobox gene clusters and the human paralogy map.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000349

Large-scale phylogenies and measuring the performance of phylogenetic estimators

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000349

Teleost HoxD and HoxA genes: comparison with tetrapods and functional evolution of the HOXD complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000349

The "fish-specific" Hox cluster duplication is coincident with the origin of teleosts.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000349

Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000349

Chromosomal rearrangements are associated with higher rates of molecular evolution in mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000349

The amphioxus Hox cluster: deuterostome posterior flexibility and Hox14

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000349

Vertebrate evolution by interspecific hybridisation--are we polyploid?

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19165336

12 December 2020

inferred from PubMed ID database lookup

Is tetralogy true? Lack of support for the "one-to-four rule"

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19165336

12 December 2020

inferred from PubMed ID database lookup

Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000349

7 January 2021

inferred from DOI database lookup

Computational identification of operons in microbial genomes

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000349

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1371/JOURNAL.PGEN.1000349

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19165336%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19165336%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

1 reference