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A periodic pattern of mRNA secondary structure created by the genetic code
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title
A periodic pattern of mRNA secondary structure created by the genetic code
(English)
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author
Svetlana A. Shabalina
object named as
Svetlana A Shabalina
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1
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author name string
Aleksey Y Ogurtsov
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2
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Nikolay A Spiridonov
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3
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language of work or name
English
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publication date
2006
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published in
Nucleic Acids Research
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volume
34
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issue
8
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page(s)
2428-37
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cites work
Statistical evidence for conserved, local secondary structure in the coding regions of eukaryotic mRNAs and pre-mRNAs
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Evidence for selection on synonymous mutations affecting stability of mRNA secondary structure in mammals
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The relationship between third-codon position nucleotide content, codon bias, mRNA secondary structure and gene expression in the drosophilid alcohol dehydrogenase genes Adh and Adhr
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Analysis of internal loops within the RNA secondary structure in almost quadratic time
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Hearing silence: non-neutral evolution at synonymous sites in mammals
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27 September 2017
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27 September 2017
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27 September 2017
Patterns in interspecies similarity correlate with nucleotide composition in mammalian 3'UTRs
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27 September 2017
Widespread selection for local RNA secondary structure in coding regions of bacterial genes
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Codon usage bias covaries with expression breadth and the rate of synonymous evolution in humans, but this is not evidence for selection
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Selection intensity against deleterious mutations in RNA secondary structures and rate of compensatory nucleotide substitutions
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tRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of highly expressed genes
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27 September 2017
RNA secondary structure and compensatory evolution
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27 September 2017
No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution
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mRNAs have greater negative folding free energies than shuffled or codon choice randomized sequences
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27 September 2017
What drives codon choices in human genes?
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27 September 2017
DNA sequence evolution: the sounds of silence
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27 September 2017
Selection intensity for codon bias
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27 September 2017
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27 September 2017
Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA.
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27 September 2017
Evolution of the genome and the genetic code: selection at the dinucleotide level by methylation and polyribonucleotide cleavage
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27 September 2017
mRNA periodical infrastructure complementary to the proof-reading site in the ribosome
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27 September 2017
Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites
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30 May 2018
Statistical correlation between protein secondary structure and messenger RNA stem-loop structure
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30 May 2018
Evidence of selection on silent site base composition in mammals: potential implications for the evolution of isochores and junk DNA.
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30 May 2018
Secondary structure and coding potential of the coat protein gene of bacteriophage MS2.
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30 May 2018
Specific codon usage pattern and its implications on the secondary structure of silk fibroin mRNA.
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30 May 2018
Coevolution of codon usage and transfer RNA abundance
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30 May 2018
Codon bias as a factor in regulating expression via translation rate in the human genome.
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28 November 2018
Similar rates but different modes of sequence evolution in introns and at exonic silent sites in rodents: evidence for selectively driven codon usage.
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28 November 2018
Mammalian mutation pressure, synonymous codon choice, and mRNA degradation
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28 November 2018
OWEN: aligning long collinear regions of genomes.
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28 November 2018
Correlation between mRNA structure of the coding region and translational pauses
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28 November 2018
Concurrent neutral evolution of mRNA secondary structures and encoded proteins
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28 November 2018
Messenger RNA structure: compatibility of hairpin loops with protein sequence
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28 November 2018
Codon usage determines translation rate in Escherichia coli
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12 December 2020
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Identifiers
DOI
10.1093/NAR/GKL287
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1586232
OpenCitations bibliographic resource ID
1586232
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1586232
PMC publication ID
1458515
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1586232
PubMed publication ID
16682450
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1586232
ResearchGate publication ID
7099549
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