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Infernal 1.1: 100-fold faster RNA homology searches

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scholarly article

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title

Infernal 1.1: 100-fold faster RNA homology searches (English)

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main subject

computational mathematics

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2

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Eric P. Nawrocki

series ordinal

1

object named as

Nawrocki EP

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language of work or name

English

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publication date

15 November 2013

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29

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issue

22

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page(s)

2933-5

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copyright license

Creative Commons Attribution 3.0 Unported

start time

2 October 2016

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stated in

April 2023 Public Data File from Crossref

copyright status

copyrighted

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cites work

Infernal 1.0: inference of RNA alignments

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810854

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7 April 2017

A probabilistic model of local sequence alignment that simplifies statistical significance estimation

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810854

retrieved

7 April 2017

Exploring genomic dark matter: a critical assessment of the performance of homology search methods on noncoding RNA

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810854

retrieved

7 April 2017

Rfam: an RNA family database

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810854

retrieved

7 April 2017

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810854

retrieved

7 April 2017

Rfam 11.0: 10 years of RNA families

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810854

retrieved

7 April 2017

Accelerated Profile HMM Searches

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810854

retrieved

7 April 2017

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810854

retrieved

7 April 2017

Local RNA structure alignment with incomplete sequence

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810854

retrieved

27 September 2017

Sequence-based heuristics for faster annotation of non-coding RNA families.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810854

retrieved

27 September 2017

Exploiting conserved structure for faster annotation of non-coding RNAs without loss of accuracy

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810854

retrieved

27 September 2017

Homology detection via family pairwise search

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810854

retrieved

27 September 2017

Small subunit ribosomal RNA modeling using stochastic context-free grammars

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/24008419

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1093/BIOINFORMATICS/BTT509

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

213688

DBLP publication ID

journals/bioinformatics/NawrockiE13

1 reference

stated in

DBLP Dataset 2021-01-02

retrieved

28 January 2021

OpenCitations bibliographic resource ID

213688

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

213688

PubMed publication ID

24008419

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

213688

ResearchGate publication ID

256451705

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Semantic Scholar paper ID

cc212956c4daf8c27843bc7e66d4270d0b8b9888

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(Q24604787)

Infernal 1.1: 100-fold faster RNA homology searches

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