(Q24608859)

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

Erna Magnúsdóttir

1

0 references

Berthold Gottgens

Berthold Gottgens

9

0 references

Fuchou Tang

5

Fuchou Tang

0 references

Sabine Dietmann

2

Sabine Dietmann

0 references

Ufuk Günesdogan

4

Ufuk Günesdogan

0 references

Azim Surani

10

M Azim Surani

0 references

Siqin Bao

6

Siqin Bao

0 references

Kaiqin Lao

8

Kaiqin Lao

0 references

author name string

Kazuhiro Murakami

3

0 references

Evangelia Diamanti

external data available at URL

7

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language of work or name

English

0 references

publication date

August 2013

0 references

https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1178

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

11 February 2021

0 references

15

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page(s)

905-15

0 references

issue

8

0 references

describes a project that uses

embryo

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

https://www.nxn.se/single-cell-studies/data.tsv

cites work

Identification of primary gene targets of TFAP2C in hormone responsive breast carcinoma cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

Chromatin dynamics during epigenetic reprogramming in the mouse germ line

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

PRDI-BF1/Blimp-1 repression is mediated by corepressors of the Groucho family of proteins

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

Identification and characterization of a novel repressor of beta-interferon gene expression

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

PGC7 binds histone H3K9me2 to protect against conversion of 5mC to 5hmC in early embryos

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

Reconstitution of the mouse germ cell specification pathway in culture by pluripotent stem cells

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

Examination of transcriptional networks reveals an important role for TCFAP2C, SMARCA4, and EOMES in trophoblast stem cell maintenance

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

Critical function of AP-2 gamma/TCFAP2C in mouse embryonic germ cell maintenance

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

Critical function of Prdm14 for the establishment of the germ cell lineage in mice

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

Blimp1 is a critical determinant of the germ cell lineage in mice

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

The zinc finger transcriptional repressor Blimp1/Prdm1 is dispensable for early axis formation but is required for specification of primordial germ cells in the mouse

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

PRDI-BF1 recruits the histone H3 methyltransferase G9a in transcriptional silencing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

Functional expression cloning of Nanog, a pluripotency sustaining factor in embryonic stem cells

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

The homeoprotein Nanog is required for maintenance of pluripotency in mouse epiblast and ES cells

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

Mouse germline restriction of Oct4 expression by germ cell nuclear factor

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

Blimp-1, a novel zinc finger-containing protein that can drive the maturation of B lymphocytes into immunoglobulin-secreting cells

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

Prdm14 promotes germline fate and naive pluripotency by repressing FGF signalling and DNA methylation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

Esrrb is a pivotal target of the Gsk3/Tcf3 axis regulating embryonic stem cell self-renewal

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

The transcription factor TCFAP2C/AP-2gamma cooperates with CDX2 to maintain trophectoderm formation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

Parallel mechanisms of epigenetic reprogramming in the germline

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

Tolerogenic function of Blimp-1 in dendritic cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

AP-2γ regulates oestrogen receptor-mediated long-range chromatin interaction and gene transcription

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

The transcription factors Blimp-1 and IRF4 jointly control the differentiation and function of effector regulatory T cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

Sequence-specific regulator Prdm14 safeguards mouse ESCs from entering extraembryonic endoderm fates

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

Blimp1-mediated repression of negative regulators is required for osteoclast differentiation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

Involvement of histone demethylase LSD1 in Blimp-1-mediated gene repression during plasma cell differentiation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

Complex genome-wide transcription dynamics orchestrated by Blimp1 for the specification of the germ cell lineage in mice

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

How is the mouse germ-cell lineage established?

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

Transcriptional repression by blimp-1 (PRDI-BF1) involves recruitment of histone deacetylase

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

Germline regulatory element of Oct-4 specific for the totipotent cycle of embryonal cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

Isolation of male embryonal carcinoma cells and their chromosome replication patterns

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

Blimp-1/Prdm1 alternative promoter usage during mouse development and plasma cell differentiation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

B lymphocyte-induced maturation protein (Blimp)-1, IFN regulatory factor (IRF)-1, and IRF-2 can bind to the same regulatory sites

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3796875

Extensive and orderly reprogramming of genome-wide chromatin modifications associated with specification and early development of germ cells in mice.

30 May 2018

1 reference

Targets and dynamics of promoter DNA methylation during early mouse development.

21 January 2018

1 reference

A molecular programme for the specification of germ cell fate in mice.

21 January 2018

1 reference

Blimp1 regulates development of the posterior forelimb, caudal pharyngeal arches, heart and sensory vibrissae in mice.

21 January 2018

1 reference

Blimp1 and the emergence of the germ line during development in the mouse.

21 January 2018

1 reference

Absence of the transcriptional repressor Blimp-1 in hematopoietic lineages reveals its role in dendritic cell homeostatic development and function.

21 January 2018

1 reference

Blimp1 associates with Prmt5 and directs histone arginine methylation in mouse germ cells.

21 January 2018

1 reference

Gene expression dynamics during germline specification in mice identified by quantitative single-cell gene expression profiling.

21 January 2018

1 reference

21 January 2018

1 reference

Epigenetic reprogramming in mouse primordial germ cells

21 January 2018

1 reference

Epiblast stem cell-based system reveals reprogramming synergy of germline factors

21 January 2018

1 reference

Epidermal terminal differentiation depends on B lymphocyte-induced maturation protein-1.

21 January 2018

1 reference

In vivo epigenomic profiling of germ cells reveals germ cell molecular signatures

21 January 2018

1 reference

Fast and accurate short read alignment with Burrows-Wheeler transform

21 January 2018

1 reference

An integrated software system for analyzing ChIP-chip and ChIP-seq data

21 January 2018

1 reference

Model-based analysis of ChIP-Seq (MACS)

21 January 2018

1 reference

BEDTools: a flexible suite of utilities for comparing genomic features

21 January 2018

1 reference

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data

21 January 2018

1 reference

PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification

21 January 2018

1 reference

MEME-ChIP: motif analysis of large DNA datasets

21 January 2018

1 reference

CENTDIST: discovery of co-associated factors by motif distribution

21 January 2018

1 reference

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

21 January 2018

1 reference

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

21 January 2018

1 reference

Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis

21 January 2018

1 reference

Open source clustering software

21 January 2018

1 reference

ChIP-Seq of transcription factors predicts absolute and differential gene expression in embryonic stem cells

21 January 2018

1 reference

Cytoscape: a software environment for integrated models of biomolecular interaction networks

21 January 2018

1 reference

Transcriptional repressor Blimp-1 is essential for T cell homeostasis and self-tolerance

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23851488

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Transcriptional repressor Blimp-1 regulates T cell homeostasis and function

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23851488

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

BLIMP-1: trigger for differentiation of myeloid lineage

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23851488

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NCB2798

1 reference

Dimensions Publication ID

1013233

1008263893

0 references

1013233

1 reference

1 reference

1 reference