(Q24674713)

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Computational analysis of tissue-specific combinatorial gene regulation: predicting interaction between transcription factors in human tissues

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scholarly article

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Computational analysis of tissue-specific combinatorial gene regulation: predicting interaction between transcription factors in human tissues (English)

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3

object named as

Donald J Zack

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author name string

Xueping Yu

1

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Jimmy Lin

2

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Jiang Qian

4

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language of work or name

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publication date

2006

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Nucleic Acids Research

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34

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4925-36

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17

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Genome-wide prediction and characterization of interactions between transcription factors in Saccharomyces cerevisiae

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7 April 2017

Towards a proteome-scale map of the human protein–protein interaction network

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7 April 2017

Differential gene expression in anatomical compartments of the human eye.

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7 April 2017

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635265

7 April 2017

Gene expression profiling reveals molecularly and clinically distinct subtypes of glioblastoma multiforme

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635265

7 April 2017

The Stanford Microarray Database accommodates additional microarray platforms and data formats

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7 April 2017

An ORFeome-based analysis of human transcription factor genes and the construction of a microarray to interrogate their expression

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7 April 2017

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7 April 2017

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

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7 April 2017

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7 April 2017

Gene ontology: tool for the unification of biology

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7 April 2017

Multiple roles for the MyoD basic region in transmission of transcriptional activation signals and interaction with MEF2

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7 April 2017

Human myocyte-specific enhancer factor 2 comprises a group of tissue-restricted MADS box transcription factors

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635265

7 April 2017

Transcriptional regulatory networks in Saccharomyces cerevisiae

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635265

7 April 2017

Complex transcriptional circuitry at the G1/S transition in Saccharomyces cerevisiae

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635265

7 April 2017

Characterization of a Cofactor That Regulates Dimerization of a Mammalian Homeodomain Protein

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635265

7 April 2017

Exploration of global gene expression patterns in pancreatic adenocarcinoma using cDNA microarrays

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7 April 2017

Identifying regulatory networks by combinatorial analysis of promoter elements

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635265

7 April 2017

Crx, a novel Otx-like paired-homeodomain protein, binds to and transactivates photoreceptor cell-specific genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635265

7 April 2017

Characterization of the yeast transcriptome

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7 April 2017

A Gene Map of the Human Genome

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7 April 2017

Cooperative activation of muscle gene expression by MEF2 and myogenic bHLH proteins

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7 April 2017

Interaction of a liver-specific nuclear factor with the fibrinogen and alpha 1-antitrypsin promoters

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7 April 2017

dbEST--database for "expressed sequence tags"

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7 April 2017

Interspersed repeats and other mementos of transposable elements in mammalian genomes

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7 April 2017

TRANSFAC: an integrated system for gene expression regulation

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635265

7 April 2017

Gene expression profiling differentiates germ cell tumors from other cancers and defines subtype-specific signatures

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635265

28 September 2017

Functional network analysis reveals extended gliomagenesis pathway maps and three novel MYC-interacting genes in human gliomas

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635265

28 September 2017

A motif co-occurrence approach for genome-wide prediction of transcription-factor-binding sites in Escherichia coli

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635265

28 September 2017

Identifying cooperativity among transcription factors controlling the cell cycle in yeast

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635265

28 September 2017

Prediction of regulatory networks: genome-wide identification of transcription factor targets from gene expression data

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635265

28 September 2017

Gene expression patterns in human liver cancers

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635265

28 September 2017

Comprehensive analysis of photoreceptor gene expression and the identification of candidate retinal disease genes

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635265

28 September 2017

A predictive model for regulatory sequences directing liver-specific transcription.

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28 September 2017

A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635265

28 September 2017

Muscle-specific transcriptional activation by MyoD

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635265

28 September 2017

Hepatocyte nuclear factor 4alpha controls the development of a hepatic epithelium and liver morphogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635265

30 May 2018

Identification of regulatory regions which confer muscle-specific gene expression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635265

30 May 2018

Crx, a novel otx-like homeobox gene, shows photoreceptor-specific expression and regulates photoreceptor differentiation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635265

30 May 2018

Genomic analysis of gene expression relationships in transcriptional regulatory networks

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https://api.crossref.org/works/10.1093%2FNAR%2FGKL595

21 January 2018

High-resolution genome-wide mapping of genetic alterations in human glial brain tumors

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https://api.crossref.org/works/10.1093%2FNAR%2FGKL595

21 January 2018

Computational identification of transcription factor binding sites via a transcription-factor-centric clustering (TFCC) algorithm.

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https://api.crossref.org/works/10.1093%2FNAR%2FGKL595

21 January 2018

Identifying target sites for cooperatively binding factors

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https://pubmed.ncbi.nlm.nih.gov/16982645

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome maps 7. The human transcript map. Wall chart

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKL595

7 January 2021

based on heuristic

inferred from DOI database lookup

Identifiers

10.1093/NAR/GKL595

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

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