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Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome

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Europe PubMed Central

title

Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome (English)

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Chris Upton

3

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author name string

Vasily Tcherepanov

series ordinal

1

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Angelika Ehlers

series ordinal

2

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language of work or name

English

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publication date

2006

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published in

BMC Genomics

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volume

7

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issue

1

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page(s)

150

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copyright license

Creative Commons Attribution 2.0 Generic

start time

13 June 2006

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copyrighted

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April 2022 Public Data File from Crossref

cites work

Base-By-Base: single nucleotide-level analysis of whole viral genome alignments

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534038

retrieved

7 April 2017

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534038

retrieved

7 April 2017

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534038

retrieved

7 April 2017

EMBOSS: the European Molecular Biology Open Software Suite

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534038

retrieved

7 April 2017

A general method applicable to the search for similarities in the amino acid sequence of two proteins

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534038

retrieved

7 April 2017

JDotter: a Java interface to multiple dotplots generated by dotter

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534038

retrieved

28 September 2017

The PEDANT genome database

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stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534038

retrieved

28 September 2017

Viral genome organizer: a system for analyzing complete viral genomes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534038

retrieved

28 September 2017

Identifiers

DOI

10.1186/1471-2164-7-150

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Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1253980

Dimensions Publication ID

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9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-7-150

OpenCitations bibliographic resource ID

1253980

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stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1253980

PubMed publication ID

16772042

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Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1253980

ResearchGate publication ID

7011634

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(Q24681858)

Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome

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