(Q24707164)

Adam M. Phillippy

7

0 references

Páll Melsted

Páll Melsted

3

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Brian D Ondov

1

Brian D. Ondov

0 references

Todd J Treangen

2

Todd J. Treangen

0 references

Nicholas H. Bergman

5

Nicholas H. Bergman

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author name string

Adam B. Mallonee

describes a project that uses

4

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language of work or name

English

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publication date

20 June 2016

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published in

Genome Biology

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volume

17

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issue

1

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page(s)

132

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MUMmer

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Cytoscape

Cytoscape

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

The rise of a digital immune system

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Structure, function and diversity of the healthy human microbiome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915045

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915045

A molecular phylogeny of living primates

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915045

A human gut microbial gene catalogue established by metagenomic sequencing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915045

Fast and accurate short read alignment with Burrows-Wheeler transform

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915045

The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

7 April 2017

1 reference

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Cytoscape: a software environment for integrated models of biomolecular interaction networks

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915045

The neighbor-joining method: a new method for reconstructing phylogenetic trees

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915045

Basic local alignment search tool

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915045

Alignment-free phylogenetics and population genetics

7 April 2017

1 reference

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Compareads: comparing huge metagenomic experiments

7 April 2017

1 reference

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28-way vertebrate alignment and conservation track in the UCSC Genome Browser

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915045

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

7 April 2017

1 reference

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An assembly and alignment-free method of phylogeny reconstruction from next-generation sequencing data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915045

Big Data: Astronomical or Genomical?

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915045

A complete bacterial genome assembled de novo using only nanopore sequencing data

28 September 2017

1 reference

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Assembling large genomes with single-molecule sequencing and locality-sensitive hashing

28 September 2017

1 reference

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Lighter: fast and memory-efficient sequencing error correction without counting

28 September 2017

1 reference

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Exploration and retrieval of whole-metagenome sequencing samples

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915045

Kraken: ultrafast metagenomic sequence classification using exact alignments

28 September 2017

1 reference

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Co-phylog: an assembly-free phylogenomic approach for closely related organisms

28 September 2017

1 reference

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Genome assembly forensics: finding the elusive mis-assembly

28 September 2017

1 reference

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Genomic insights that advance the species definition for prokaryotes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915045

Alignment-free sequence comparison-a review

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915045

Distributional regimes for the number of k-word matches between two random sequences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915045

A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915045

A measure of the similarity of sets of sequences not requiring sequence alignment

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915045

KMC 2: fast and resource-frugal k-mer counting

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915045

andi: fast and accurate estimation of evolutionary distances between closely related genomes

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915045

Performance comparison between k-tuple distance and four model-based distances in phylogenetic tree reconstruction

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915045

How independent are the appearances of n-mers in different genomes?

30 May 2018

1 reference

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A genomic distance based on MUM indicates discontinuity between most bacterial species and genera.

30 May 2018

1 reference

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Reducing storage requirements for biological sequence comparison.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13059-016-0997-X

A preprocessor for shotgun assembly of large genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13059-016-0997-X

The Power of Simple Tabulation Hashing

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13059-016-0997-X

Counting Distinct Elements in a Data Stream

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13059-016-0997-X

An algorithm for drawing general undirected graphs

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13059-016-0997-X

10.1186/S13059-016-0997-X

21 January 2018

Identifiers

DOI

1 reference

Dimensions Publication ID

1050687712

0 references

1 reference

1 reference

PubMed publication ID

27323842

1 reference