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Progress towards mapping the universe of protein folds
scientific article
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instance of
scholarly article
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title
Progress towards mapping the universe of protein folds
(English)
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main subject
protein folding
0 references
Universe
1 reference
based on heuristic
inferred from title
author
Christine Orengo
series ordinal
3
0 references
author name string
Alastair Grant
series ordinal
1
0 references
David Lee
series ordinal
2
0 references
language of work or name
English
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publication date
2004
0 references
published in
Genome Biology
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volume
5
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issue
5
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page(s)
107
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cites work
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The dominance of the population by a selected few: power-law behaviour applies to a wide variety of genomic properties
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7 April 2017
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Homology among (betaalpha)(8) barrels: implications for the evolution of metabolic pathways
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Protein superfamilies and domain superfolds
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7 April 2017
One thousand families for the molecular biologist
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7 April 2017
SCOP database in 2004: refinements integrate structure and sequence family data
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7 April 2017
One fold with many functions: the evolutionary relationships between TIM barrel families based on their sequences, structures and functions
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7 April 2017
Recent improvements to the SMART domain-based sequence annotation resource
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7 April 2017
Hidden Markov models for detecting remote protein homologies
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7 April 2017
The SUPERFAMILY database in 2004: additions and improvements
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28 September 2017
The Genomic Threading Database: a comprehensive resource for structural annotations of the genomes from key organisms
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28 September 2017
MIPS: analysis and annotation of proteins from whole genomes
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28 September 2017
Simple stochastic birth and death models of genome evolution: was there enough time for us to evolve?
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28 September 2017
Recognizing the fold of a protein structure.
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28 September 2017
More than the sum of their parts: on the evolution of proteins from peptides
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28 September 2017
Protein families and TRIBES in genome sequence space
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28 September 2017
Have we seen all structures corresponding to short protein fragments in the Protein Data Bank? An update
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28 September 2017
A structural perspective on genome evolution
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28 September 2017
The PredictProtein server.
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28 September 2017
Evolution of the protein repertoire
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28 September 2017
Monte Carlo estimation of the number of possible protein folds: Effects of sampling bias and folds distributions
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28 September 2017
Domains, motifs and clusters in the protein universe
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28 September 2017
Gene3D: structural assignments for the biologist and bioinformaticist alike
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28 September 2017
The CATH database: an extended protein family resource for structural and functional genomics
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=416458
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28 September 2017
PRINTS and its automatic supplement, prePRINTS.
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28 September 2017
ProtoNet: hierarchical classification of the protein space
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28 September 2017
Ensembl 2002: accommodating comparative genomics
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28 September 2017
The structure of the protein universe and genome evolution
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28 September 2017
Did evolution leap to create the protein universe?
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28 September 2017
Evolution of protein structures and functions
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28 September 2017
Gene3D: structural assignment for whole genes and genomes using the CATH domain structure database
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28 September 2017
The CATH extended protein-family database: providing structural annotations for genome sequences.
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28 September 2017
Fold predictions for bacterial genomes.
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28 September 2017
Review: what can structural classifications reveal about protein evolution?
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28 September 2017
Evolution of function in protein superfamilies, from a structural perspective.
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28 September 2017
Genomes OnLine Database (GOLD): a monitor of genome projects world-wide
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28 September 2017
CluSTr: a database of clusters of SWISS-PROT+TrEMBL proteins
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28 September 2017
Estimating the number of protein folds and families from complete genome data
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28 September 2017
Estimating the total number of protein folds
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28 September 2017
Do transmembrane protein superfolds exist?
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28 September 2017
Why are some proteins structures so common?
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28 September 2017
Towards a complete map of the protein space based on a unified sequence and structure analysis of all known proteins.
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30 May 2018
Estimating the number of protein folds.
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30 May 2018
CHOP proteins into structural domain-like fragments
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28 November 2018
Evolution of protein superfamilies and bacterial genome size
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28 November 2018
Identifying importance of amino acids for protein folding from crystal structures.
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28 November 2018
Exhaustive enumeration of protein domain families
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28 November 2018
Quantifying the similarities within fold space
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28 November 2018
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28 November 2018
Target space for structural genomics revisited
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28 November 2018
A unifold, mesofold, and superfold model of protein fold use
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An insight into domain combinations
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28 November 2018
Structure-based evaluation of sequence comparison and fold recognition alignment accuracy.
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28 November 2018
DIVCLUS: an automatic method in the GEANFAMMER package that finds homologous domains in single- and multi-domain proteins
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28 November 2018
Protein family and fold occurrence in genomes: power-law behaviour and evolutionary model
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based on heuristic
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based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1186/GB-2004-5-5-107
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Dimensions Publication ID
1053191830
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PMC publication ID
416458
0 references
PubMed publication ID
15128436
0 references
ResearchGate publication ID
8578045
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