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Global nucleosome occupancy in yeast
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scholarly article
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title
Global nucleosome occupancy in yeast
(English)
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author
Bradley Bernstein
series ordinal
1
object named as
Bradley E Bernstein
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Stuart Schreiber
series ordinal
5
object named as
Stuart L Schreiber
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author name string
Chih Long Liu
series ordinal
2
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Emily L Humphrey
series ordinal
3
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Ethan O Perlstein
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4
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language of work or name
English
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publication date
2004
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published in
Genome Biology
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volume
5
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issue
9
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page(s)
R62
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cites work
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Transcriptional regulatory networks in Saccharomyces cerevisiae
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The histone 3 lysine 36 methyltransferase, SET2, is involved in transcriptional elongation
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PubMed Central
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7 April 2017
Rap1p and other transcriptional regulators can function in defining distinct domains of gene expression
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7 April 2017
In vivo topography of Rap1p-DNA complex at Saccharomyces cerevisiae TEF2 UAS(RPG) during transcriptional regulation.
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7 April 2017
Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association
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7 April 2017
Regulation of ribosome biogenesis by the rapamycin-sensitive TOR-signaling pathway in Saccharomyces cerevisiae
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7 April 2017
Two DNA-binding factors recognize specific sequences at silencers, upstream activating sequences, autonomously replicating sequences, and telomeres in Saccharomyces cerevisiae
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PubMed Central
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7 April 2017
Genome-wide location and function of DNA binding proteins
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PubMed Central
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7 April 2017
Signaling network model of chromatin
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PubMed Central
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7 April 2017
Cellular memory and the histone code
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PubMed Central
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7 April 2017
Systematic determination of genetic network architecture
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PubMed Central
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7 April 2017
Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity
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PubMed Central
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7 April 2017
Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF
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PubMed Central
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7 April 2017
Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II
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PubMed Central
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7 April 2017
Methylation of histone H3 Lys 4 in coding regions of active genes
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
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7 April 2017
Precision and functional specificity in mRNA decay
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
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7 April 2017
Cooperation between complexes that regulate chromatin structure and transcription
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PubMed Central
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7 April 2017
Histone methylation in transcriptional control
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PubMed Central
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7 April 2017
Rad6-dependent ubiquitination of histone H2B in yeast
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
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7 April 2017
Rapamycin-modulated transcription defines the subset of nutrient-sensitive signaling pathways directly controlled by the Tor proteins
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
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7 April 2017
Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
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7 April 2017
Transcriptional silencing in yeast is associated with reduced nucleosome acetylation
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
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7 April 2017
The use of chromatin immunoprecipitation assays in genome-wide analyses of histone modifications
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PubMed Central
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28 September 2017
Identifying cooperativity among transcription factors controlling the cell cycle in yeast
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PubMed Central
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28 September 2017
Getting into chromatin: how do transcription factors get past the histones?
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PubMed Central
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28 September 2017
Transcriptional elongation by RNA polymerase II and histone methylation
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PubMed Central
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28 September 2017
Tails of intrigue: phosphorylation of RNA polymerase II mediates histone methylation
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PubMed Central
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28 September 2017
Genomewide demarcation of RNA polymerase II transcription units revealed by physical fractionation of chromatin
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PubMed Central
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28 September 2017
Histone acetylation and deacetylation in yeast
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
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28 September 2017
Phosphorylation of RNA polymerase II CTD regulates H3 methylation in yeast
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
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28 September 2017
Collaborative competition mechanism for gene activation in vivo
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
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28 September 2017
The Stanford Microarray Database: data access and quality assessment tools
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
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28 September 2017
The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
retrieved
28 September 2017
The tor pathway regulates gene expression by linking nutrient sensing to histone acetylation
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
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28 September 2017
Association of the histone methyltransferase Set2 with RNA polymerase II plays a role in transcription elongation
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
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28 September 2017
Braking the silence: how heterochromatic gene repression is stopped in its tracks.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
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28 September 2017
Heterochromatin: new possibilities for the inheritance of structure
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
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28 September 2017
Chemical inhibition of the Pho85 cyclin-dependent kinase reveals a role in the environmental stress response
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
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28 September 2017
Promoter targeting of chromatin-modifying complexes.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
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28 September 2017
Poly(dA-dT) promoter elements increase the equilibrium accessibility of nucleosomal DNA target sites
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
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28 September 2017
Coordinate regulation of yeast ribosomal protein genes is associated with targeted recruitment of Esa1 histone acetylase
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
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28 September 2017
In vivo cross-linking and immunoprecipitation for studying dynamic Protein:DNA associations in a chromatin environment
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
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28 September 2017
Chromatin opening and transactivator potentiation by RAP1 in Saccharomyces cerevisiae
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
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28 September 2017
UASrpg can function as a heterochromatin boundary element in yeast
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
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28 September 2017
Use of a selection technique to identify the diversity of binding sites for the yeast RAP1 transcription factor
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
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28 September 2017
Binding of disparate transcriptional activators to nucleosomal DNA is inherently cooperative
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
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28 September 2017
Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
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28 September 2017
Chromatin and transcription--how transcription factors battle with a repressive chromatin environment
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
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30 May 2018
Nucleosome loss activates yeast downstream promoters in vivo
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
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30 May 2018
Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
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28 November 2018
Nucleosomes unfold completely at a transcriptionally active promoter.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
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28 November 2018
Regulation of subtelomeric silencing during stress response.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522869
retrieved
28 November 2018
Mapping chromatin structure in yeast
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/15345046
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Partitioning the transcriptional program induced by rapamycin among the effectors of the Tor proteins
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/15345046
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Evidence for two modes of cooperative DNA binding in vivo that do not involve direct protein-protein interactions
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/15345046
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1186/GB-2004-5-9-R62
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
4020956
Dimensions Publication ID
1052780836
0 references
OpenCitations bibliographic resource ID
4020956
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
4020956
PMCID
522869
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
4020956
PubMed ID
15345046
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
4020956
ResearchGate publication ID
8368252
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