(Q24804556)

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Localization of spermine binding sites in 23S rRNA by photoaffinity labeling: parsing the spermine contribution to ribosomal 50S subunit functions

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Localization of spermine binding sites in 23S rRNA by photoaffinity labeling: parsing the spermine contribution to ribosomal 50S subunit functions (English)

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author name string

Maria A Xaplanteri

1

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Alexandros D Petropoulos

2

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George P Dinos

3

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Dimitrios L Kalpaxis

4

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publication date

2005

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Nucleic Acids Research

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33

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9

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2792-805

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Structural basis for the antibiotic activity of ketolides and azalides

1 reference

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A cryo-electron microscopic study of ribosome-bound termination factor RF2

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High resolution structure of the large ribosomal subunit from a mesophilic eubacterium

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7 April 2017

Crystal structure of the ribosome at 5.5 A resolution

1 reference

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7 April 2017

The structural basis of ribosome activity in peptide bond synthesis

1 reference

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The 3D arrangement of the 23 S and 5 S rRNA in the Escherichia coli 50 S ribosomal subunit based on a cryo-electron microscopic reconstruction at 7.5 A resolution

1 reference

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7 April 2017

Crystal structure of a conserved ribosomal protein-RNA complex

1 reference

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7 April 2017

Mapping functionally important motifs SPF and GGQ of the decoding release factor RF2 to the Escherichia coli ribosome by hydroxyl radical footprinting. Implications for macromolecular mimicry and structural changes in RF2

1 reference

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7 April 2017

Ribosome structure and the mechanism of translation

1 reference

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7 April 2017

The contribution of metal ions to the structural stability of the large ribosomal subunit

1 reference

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28 September 2017

Ribosomal crystallography: a flexible nucleotide anchoring tRNA translocation, facilitates peptide-bond formation, chirality discrimination and antibiotics synergism

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The ribosome as an entropy trap

1 reference

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Effect of polyamines on the inhibition of peptidyltransferase by antibiotics: revisiting the mechanism of chloramphenicol action

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Microenvironment analysis and identification of magnesium binding sites in RNA

1 reference

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Protein synthesis at atomic resolution: mechanistics of translation in the light of highly resolved structures for the ribosome.

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The involvement of RNA in ribosome function

1 reference

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28 September 2017

The identification of spermine binding sites in 16S rRNA allows interpretation of the spermine effect on ribosomal 30S subunit functions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129027

28 September 2017

A conformational change in the ribosomal peptidyl transferase center upon active/inactive transition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129027

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Magnesium ions mediate contacts between phosphoryl oxygens at positions 2122 and 2176 of the 23S rRNA and ribosomal protein L1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129027

28 September 2017

Photoaffinity polyamines: interactions with AcPhe-tRNA free in solution or bound at the P-site of Escherichia coli ribosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129027

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Polyamines: mysterious modulators of cellular functions

1 reference

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The non-enzymatic hydrolysis of oligoribonucleotides VI. The role of biogenic polyamines

1 reference

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Characterization of functionally active subribosomal particles from Thermus aquaticus

1 reference

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Lead-catalysed specific cleavage of ribosomal RNAs

1 reference

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Requirement for a conserved, tertiary interaction in the core of 23S ribosomal RNA.

1 reference

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Regions of 23 S ribosomal RNA proximal to transfer RNA bound at the P and E sites

1 reference

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Total reconstitution of functionally active 50S ribosomal subunits from Escherichia coli

1 reference

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Unusual resistance of peptidyl transferase to protein extraction procedures

1 reference

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Proteins associated with rRNA in the Escherichia coli ribosome

1 reference

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Nucleoside triphosphate regeneration decreases the frequency of translation errors

1 reference

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Visualization of release factor 3 on the ribosome during termination of protein synthesis

1 reference

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Orientation of ribosome recycling factor in the ribosome from directed hydroxyl radical probing.

1 reference

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30 May 2018

Ribosomes and translation

1 reference

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30 May 2018

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1 reference

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1 reference

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30 May 2018

Polyamine binding sites on Escherichia coli ribosomes.

1 reference

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1 reference

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1 reference

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1 reference

https://pubmed.ncbi.nlm.nih.gov/15897324

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based on heuristic

inferred from PubMed ID database lookup

Mg2+/NH4+/polyamine system for polyuridine-dependent polyphenylalanine synthesis with near in vivo characteristics

1 reference

https://pubmed.ncbi.nlm.nih.gov/15897324

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Fine structure of the peptidyl transferase centre on 23 S-like rRNAs deduced from chemical probing of antibiotic-ribosome complexes

1 reference

https://pubmed.ncbi.nlm.nih.gov/15897324

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based on heuristic

inferred from PubMed ID database lookup

Protein-RNA recognition

1 reference

https://pubmed.ncbi.nlm.nih.gov/15897324

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleotides in 23S rRNA protected by the association of 30S and 50S ribosomal subunits

1 reference

https://pubmed.ncbi.nlm.nih.gov/15897324

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effect of buffer conditions on the position of tRNA on the 70 S ribosome as visualized by cryoelectron microscopy

1 reference

https://pubmed.ncbi.nlm.nih.gov/15897324

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Probing Ribosome Structure by Europium-Induced RNA Cleavage

1 reference

https://pubmed.ncbi.nlm.nih.gov/15897324

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based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKI557

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