(Q24811430)

4 July 2017

title

What makes ribosome-mediated transcriptional attenuation sensitive to amino acid limitation? (English)

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4 July 2017

1

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4 July 2017

2

Måns Ehrenberg

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4 July 2017

language of work or name

English

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publication date

24 June 2005

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PLOS Computational Biology

4 July 2017

published in

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4 July 2017

volume

1

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4 July 2017

issue

1

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4 July 2017

page(s)

e2

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Creative Commons Attribution 4.0 International

4 July 2017

copyright license

start time

24 June 2005

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Transcription attenuation: once viewed as a novel regulatory strategy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

Attenuation in the control of expression of bacterial operons

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

Ribosome bypassing at serine codons as a test of the model of selective transfer RNA charging

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

Selective charging of tRNA isoacceptors induced by amino-acid starvation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

Near-critical behavior of aminoacyl-tRNA pools in E. coli at rate-limiting supply of amino acids

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

Comparison of repressor and transcriptional attenuator systems for control of amino acid biosynthetic operons

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

Noise in a minimal regulatory network: plasmid copy number control

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

Interaction of a nascent RNA structure with RNA polymerase is required for hairpin-dependent transcriptional pausing but not for transcript release

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

Hypothesis: hypersensitive plasmid copy number control for ColE1

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

Role of regulatory features of the trp operon of Escherichia coli in mediating a response to a nutritional shift

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

Sensitivity amplification in biochemical systems

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

Repression is relieved before attenuation in the trp operon of Escherichia coli as tryptophan starvation becomes increasingly severe

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

Codon--anticodon pairing: the wobble hypothesis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

Transcription attenuation in Salmonella typhimurium: the significance of rare leucine codons in the leu leader

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

Theoretical evaluation of transcriptional pausing effect on the attenuation in trp leader sequence

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

Translation activates the paused transcription complex and restores transcription of the trp operon leader region

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

Detection of transcription-pausing in vivo in the trp operon leader region

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

Transcription attenuation-mediated control of leu operon expression: influence of the number of Leu control codons

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

Attenuation in the Escherichia coli tryptophan operon: role of RNA secondary structure involving the tryptophan codon region

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

Pausing of RNA polymerase during in vitro transcription of the tryptophan operon leader region

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

DNA sequence changes of mutations altering attenuation control of the histidine operon of Salmonella typhimurium

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

Regulation of the expression of the histidine operon in Salmonella typhimurium

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

Efficiency of protein and messenger RNA synthesis in bacteriophage T4-infected cells of Escherichia coli

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

Histidine regulation in Salmonella typhimurium. XI. The percentage of transfer RNA His charged in vivo and its relation to the repression of the histidine operon

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

Regulation of basal level expression of the tryptophan operon of Escherichia coli.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

Translational control of transcription termination at the attenuator of the Escherichia coli tryptophan operon

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

Selective charging of tRNA isoacceptors explains patterns of codon usage.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

On the role of the starved codon and the takeoff site in ribosome bypassing in Escherichia coli

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

Attenuation regulation of amino acid biosynthetic operons in proteobacteria: comparative genomics analysis.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

A theoretical study of the attenuation control mechanism

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183508

The region between the operator and first structural gene of the tryptophan operon of Escherichia coli may have a regulatory function

28 November 2018

1 reference

12 December 2020

Translation and messenger RNA secondary structure

1 reference

12 December 2020

Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes

1 reference

12 December 2020

Theory of regulation by the attenuation mechanism: stochastic model for the attenuation fo the Escherichia coli tryptophan operon

1 reference

12 December 2020

Costs of accuracy determined by a maximal growth rate constraint

1 reference

12 December 2020

Codon usage determines translation rate in Escherichia coli

1 reference

12 December 2020

10.1371/JOURNAL.PCBI.0010002

Identifiers

DOI

1 reference

4 July 2017

DBLP publication ID

journals/ploscb/ElfE05

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DBLP Dataset 2021-01-02

28 January 2021

1 reference

4 July 2017

1 reference