(Q24812830)

4 July 2017

title

A-tract clusters may facilitate DNA packaging in bacterial nucleoid (English)

1 reference

4 July 2017

author name string

Michael Y Tolstorukov

1

1 reference

4 July 2017

Konstantin M Virnik

2

1 reference

4 July 2017

Sankar Adhya

3

1 reference

4 July 2017

Victor B Zhurkin

4

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4 July 2017

language of work or name

English

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publication date

15 July 2005

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4 July 2017

published in

Nucleic Acids Research

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4 July 2017

volume

33

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4 July 2017

issue

12

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4 July 2017

page(s)

3907-3918

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Codon usage tabulated from international DNA sequence databases: status for the year 2000

4 July 2017

cites work

1 reference

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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28 September 2017

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Retracted: The bacterial condensin MukBEF compacts DNA into a repetitive, stable structure

28 September 2017

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28 September 2017

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28 September 2017

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Spectral analysis of distributions: finding periodic components in eukaryotic enzyme length data

28 September 2017

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An architectural role of the Escherichia coli chromatin protein FIS in organising DNA.

28 September 2017

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Curved DNA in promoter sequences

28 September 2017

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Ecologic genomics of DNA: upstream bending in prokaryotic promoters

28 September 2017

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Closing the ring: links between SMC proteins and chromosome partitioning, condensation, and supercoiling

28 September 2017

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Transcription regulation by repressosome and by RNA polymerase contact

28 September 2017

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10-11 bp periodicities in complete genomes reflect protein structure and DNA folding

28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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Action at a distance: DNA-looping and initiation of transcription

28 September 2017

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Evidence for opposite groove-directed curvature of GGGCCC and AAAAA sequence elements

28 September 2017

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The bacterial nucleoid revisited

28 September 2017

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Periodicity in DNA primary structure is defined by secondary structure of the coded protein

28 September 2017

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28 September 2017

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The pitch of chromatin DNA is reflected in its nucleotide sequence

28 September 2017

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28 September 2017

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28 September 2017

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Calibration of DNA curvature and a unified description of sequence-directed bending

28 September 2017

1 reference

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28 September 2017

1 reference

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Sequence-directed curvature of DNA.

28 September 2017

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28 September 2017

Intrinsically bent DNA.

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Functional consequences of improved structural information on bacterial nucleoids

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1176013

Species-specific patterns of DNA bending and sequence

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1176013

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1176013

DNA curving and bending in protein-DNA recognition

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1176013

28 September 2017

The Bacterial Nucleoid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1176013

Histone-like proteins in the purified Escherichia coli deoxyribonucleoprotein

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1176013

On the structure of the folded chromosome of Escherichia coli

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1176013

The intrinsic curvature of DNA in solution.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1176013

Curved helix segments can uniquely orient the topology of supertwisted DNA.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1176013

Topological measurement of an A-tract bend angle: comparison of the bent and straightened states

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1176013

Gal repressosome contains an antiparallel DNA loop

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1176013

Sequence periodicity in complete genomes of archaea suggests positive supercoiling

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1176013

Physical characterization of a kinetoplast DNA fragment with unusual properties

28 November 2018

1 reference

12 December 2020

Sequence-directed curvature of DNA

1 reference

12 December 2020

Base sequence effects in double-helical DNA. III. Average properties of curved DNA

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12 December 2020

CC/GG contacts facilitate the B to A transition of DNA in solution

1 reference

12 December 2020

B-DNA twisting correlates with base-pair morphology.

1 reference

12 December 2020

Short-range order in two eukaryotic genomes: relation to chromosome structure

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12 December 2020

Distribution of bending propensity in DNA sequences

1 reference

12 December 2020

Twelve species of the nucleoid-associated protein from Escherichia coli. Sequence recognition specificity and DNA binding affinity

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12 December 2020

Relationship between codon usage and sequence-dependent curvature of genomes

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKI699

1 reference

4 July 2017

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1 reference