(Q24813267)

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PRODOC: a resource for the comparison of tethered protein domain architectures with in-built information on remotely related domain families

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scholarly article

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PRODOC: a resource for the comparison of tethered protein domain architectures with in-built information on remotely related domain families (English)

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7

object named as

S Gore

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author name string

O Krishnadev

1

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N Rekha

2

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S B Pandit

3

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S Abhiman

4

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S Mohanty

5

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L S Swapna

6

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N Srinivasan

8

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language of work or name

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publication date

1 July 2005

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Nucleic Acids Research

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33

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Web Server issue

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W126-9

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SUPFAM: a database of sequence superfamilies of protein domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

7 April 2017

The COG database: an updated version includes eukaryotes

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

7 April 2017

Functional associations of proteins in entire genomes by means of exhaustive detection of gene fusions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

7 April 2017

The Ensembl genome database project

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

7 April 2017

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

7 April 2017

SCOP: a structural classification of proteins database for the investigation of sequences and structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

7 April 2017

Assembly of Cell Regulatory Systems Through Protein Interaction Domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

7 April 2017

The InterPro database, 2003 brings increased coverage and new features

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

7 April 2017

Domain combinations in archaeal, eubacterial and eukaryotic proteomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

7 April 2017

Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

7 April 2017

SMART 4.0: towards genomic data integration

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7 April 2017

Detecting protein function and protein-protein interactions from genome sequences

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

7 April 2017

Protein interaction maps for complete genomes based on gene fusion events

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

7 April 2017

Structure, function and evolution of multidomain proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

28 September 2017

Comparative analysis of protein domain organization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

28 September 2017

The SUPERFAMILY database in 2004: additions and improvements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

28 September 2017

Eukaryotic domain evolution inferred from genome comparisons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

28 September 2017

Integr8: enhanced inter-operability of European molecular biology databases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

28 September 2017

Gene3D: structural assignments for the biologist and bioinformaticist alike

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

28 September 2017

PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

28 September 2017

Sequence analysis of multidomain proteins: past perspectives and future directions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

28 September 2017

CDART: protein homology by domain architecture

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

28 September 2017

A comparison of profile hidden Markov model procedures for remote homology detection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

28 September 2017

The natural history of protein domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

28 September 2017

The identification of functional modules from the genomic association of genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

28 September 2017

Protein domain analysis in the era of complete genomes

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

28 September 2017

The geometry of domain combination in proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

28 September 2017

SUPFAM--a database of potential protein superfamily relationships derived by comparing sequence-based and structure-based families: implications for structural genomics and function annotation in genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

28 September 2017

Sensitive protein comparisons with profiles and hidden Markov models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

28 September 2017

Genes linked by fusion events are generally of the same functional category: a systematic analysis of 30 microbial genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

28 September 2017

New features of the Blocks Database servers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

28 September 2017

PRINTS prepares for the new millennium.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

28 September 2017

Modular arrangement of proteins as inferred from analysis of homology.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

28 September 2017

Multi-domain protein families and domain pairs: comparison with known structures and a random model of domain recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

28 November 2018

The FlyBase database of the Drosophila genome projects and community literature.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160235

28 November 2018

Prediction of protein interactions: metabolic enzymes are frequently involved in gene fusion

1 reference

https://pubmed.ncbi.nlm.nih.gov/15980440

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DOMO: a new database of aligned protein domains

1 reference

https://pubmed.ncbi.nlm.nih.gov/15980440

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interaction interfaces of protein domains are not topologically equivalent across families within superfamilies: Implications for metabolic and signaling pathways

1 reference

https://pubmed.ncbi.nlm.nih.gov/15980440

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKI474

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DBLP publication ID

journals/nar/KrishnadevRPAMSGS05

1 reference

DBLP Dataset 2021-01-02

28 January 2021

PMC publication ID

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PubMed publication ID

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ResearchGate publication ID

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