(Q25256945)

English

Linking enzyme sequence to function using Conserved Property Difference Locator to identify and annotate positions likely to control specific functionality

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

6 July 2017

1 reference

Europe PubMed Central

Linking enzyme sequence to function using Conserved Property Difference Locator to identify and annotate positions likely to control specific functionality (English)

1 reference

Europe PubMed Central

PubMed publication ID

6 July 2017

author name string

Kimberly M Mayer

1

1 reference

Europe PubMed Central

PubMed publication ID

6 July 2017

Sean R McCorkle

2

1 reference

Europe PubMed Central

PubMed publication ID

6 July 2017

John Shanklin

3

1 reference

Europe PubMed Central

PubMed publication ID

6 July 2017

language of work or name

0 references

publication date

30 November 2005

1 reference

Europe PubMed Central

PubMed publication ID

6 July 2017

BMC Bioinformatics

1 reference

Europe PubMed Central

PubMed publication ID

6 July 2017

6

1 reference

Europe PubMed Central

PubMed publication ID

6 July 2017

1

0 references

284

1 reference

Europe PubMed Central

PubMed publication ID

6 July 2017

Crystal structure of UDP-N-acetylmuramoyl-L-alanyl-D-glutamate: meso-diaminopimelate ligase from Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326233

7 April 2017

Determination of the MurD mechanism through crystallographic analysis of enzyme complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326233

7 April 2017

T-Coffee: A novel method for fast and accurate multiple sequence alignment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326233

7 April 2017

The OLE1 gene of Saccharomyces cerevisiae encodes the delta 9 fatty acid desaturase and can be functionally replaced by the rat stearoyl-CoA desaturase gene.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326233

7 April 2017

DESATURATION AND RELATED MODIFICATIONS OF FATTY ACIDS1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326233

7 April 2017

Identification of non-heme diiron proteins that catalyze triple bond and epoxy group formation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326233

7 April 2017

Eight histidine residues are catalytically essential in a membrane-associated iron enzyme, stearoyl-CoA desaturase, and are conserved in alkane hydroxylase and xylene monooxygenase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326233

7 April 2017

DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326233

7 April 2017

An evolutionary trace method defines binding surfaces common to protein families

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326233

7 April 2017

Structure, function and evolution of microbial adenylyl and guanylyl cyclases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326233

28 September 2017

Prediction of functional sites in proteins using conserved functional group analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326233

28 September 2017

Structure and function of the Mur enzymes: development of novel inhibitors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326233

28 September 2017

Desaturation and hydroxylation. Residues 148 and 324 of Arabidopsis FAD2, in addition to substrate chain length, exert a major influence in partitioning of catalytic specificity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326233

28 September 2017

Evidence of a functional requirement for a carbamoylated lysine residue in MurD, MurE and MurF synthetases as established by chemical rescue experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326233

28 September 2017

Two amino acid substitutions convert a guanylyl cyclase, RetGC-1, into an adenylyl cyclase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326233

28 September 2017

Crystal structure of UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase from Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326233

28 September 2017

A method to predict functional residues in proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326233

28 September 2017

Modification of the substrate specificity of an acyl-acyl carrier protein thioesterase by protein engineering

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326233

28 September 2017

The classification of amino acid conservation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326233

31 May 2018

Automated selection of positions determining functional specificity of proteins by comparative analysis of orthologous groups in protein families.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326233

28 November 2018

Dimorphecolic acid is synthesized by the coordinate activities of two divergent Delta12-oleic acid desaturases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326233

28 November 2018

Fungal responsive fatty acid acetylenases occur widely in evolutionarily distant plant families

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326233

28 November 2018

Prediction of catalytic residues in enzymes based on known tertiary structure, stability profile, and sequence conservation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326233

28 November 2018

Quality assessment of multiple alignment programs.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326233

28 November 2018

Metabolic engineering of Saccharomyces cerevisiae for production of novel lipid compounds

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326233

28 November 2018

Analysis and prediction of functional sub-types from protein sequence alignments.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326233

28 November 2018

Catalytic plasticity of fatty acid modification enzymes underlying chemical diversity of plant lipids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326233

28 November 2018

Protein sequence alignments: a strategy for the hierarchical analysis of residue conservation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326233

28 November 2018

Role of the Ortholog and Paralog Amino Acid Invariants in the Active Site of the UDP-MurNAc-l-alanine:d-glutamate Ligase (MurD)†

1 reference

https://pubmed.ncbi.nlm.nih.gov/16318626

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Improved stearate phenotype in transgenic canola expressing a modified acyl-acyl carrier protein thioesterase

1 reference

https://pubmed.ncbi.nlm.nih.gov/16318626

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The use of CLUSTAL W and CLUSTAL X for multiple sequence alignment

1 reference

https://pubmed.ncbi.nlm.nih.gov/16318626

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/16318626

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2105-6-284

1 reference

Europe PubMed Central

PubMed publication ID

6 July 2017

DBLP publication ID

journals/bmcbi/MayerMS05

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

6 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

6 July 2017

ResearchGate publication ID

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