(Q25257459)

6 July 2017

title

A reliable method to display authentic DNase I hypersensitive sites at long-ranges in single-copy genes from large genomes (English)

1 reference

6 July 2017

Matthew E Pipkin

1

1 reference

6 July 2017

Mathias G Lichtenheld

series ordinal

2

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6 July 2017

language of work or name

English

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publication date

1 March 2006

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6 July 2017

published in

Nucleic Acids Research

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6 July 2017

volume

34

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6 July 2017

issue

4

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6 July 2017

page(s)

e34

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describes a project that uses

6 July 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC1388096/fullTextXML

inferred from PubMed Central ID database lookup

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Genome-wide identification of DNaseI hypersensitive sites using active chromatin sequence libraries

7 April 2017

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A global control region defines a chromosomal regulatory landscape containing the HoxD cluster

7 April 2017

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7 April 2017

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7 April 2017

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Initial sequencing and analysis of the human genome

7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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Cloning and characterization of ADAMTS-14, a novel ADAMTS displaying high homology with ADAMTS-2 and ADAMTS-3

7 April 2017

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Analysis of vertebrate SCL loci identifies conserved enhancers

7 April 2017

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7 April 2017

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High-throughput localization of functional elements by quantitative chromatin profiling

28 September 2017

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Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping

28 September 2017

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Discovery of functional noncoding elements by digital analysis of chromatin structure

28 September 2017

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28 September 2017

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Multiple interactions between regulatory regions are required to stabilize an active chromatin hub.

28 September 2017

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Identifying gene regulatory elements by genome-wide recovery of DNase hypersensitive sites

28 September 2017

1 reference

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A complex chromatin landscape revealed by patterns of nuclease sensitivity and histone modification within the mouse beta-globin locus

28 September 2017

1 reference

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DNA methylation and chromatin structure regulate T cell perforin gene expression

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1388096

Controlling the double helix

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1388096

Strategies and tools for whole-genome alignments

28 September 2017

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Setting the boundaries of chromatin domains and nuclear organization

28 September 2017

1 reference

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Genomic strategies to identify mammalian regulatory sequences

28 September 2017

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Use of high specific activity StarFire oligonucleotide probes to visualize low-abundance pre-mRNA splicing intermediates in S. pombe.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1388096

Structural and functional conservation at the boundaries of the chicken beta-globin domain

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1388096

Identification of a Coordinate Regulator of Interleukins 4, 13, and 5 by Cross-Species Sequence Comparisons

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1388096

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1388096

Interleukin 2 receptor signaling regulates the perforin gene through signal transducer and activator of transcription (Stat)5 activation of two enhancers

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1388096

Detection of Epstein-Barr virus EBER sequence in post-transplant lymphoma patients with DNA dendrimers

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1388096

A critical role of Sp1- and Ets-related transcription factors in maintaining CTL-specific expression of the mouse perforin gene

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1388096

The granulocyte-macrophage colony-stimulating factor/interleukin 3 locus is regulated by an inducible cyclosporin A-sensitive enhancer.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1388096

DNAase I-hypersensitive sites of chromatin

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1388096

Pulsed-field electrophoresis: application of a computer model to the separation of large DNA molecules

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1388096

Nuclease hypersensitive sites in chromatin

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1388096

Structure of the human perforin gene. A simple gene organization with interesting potential regulatory sequences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1388096

Identification and characterization of a T-cell-specific enhancer adjacent to the murine CD4 gene

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1388096

A central role of perforin in cytolysis?

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1388096

Human perforin (PRF1) maps to 10q22, a region that is syntenic with mouse chromosome 10.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1388096

T cell-specific protein-DNA interactions occurring at the CD4 locus: identification of possible transcriptional control elements of the murine CD4 gene

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1388096

Analysis of the functional role of chromosome 10 loss in human glioblastomas.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1388096

Modulation of perforin and granzyme messenger RNA expression in human natural killer cells.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1388096

A dominant control region from the human beta-globin locus conferring integration site-independent gene expression

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1388096

TCGF (IL 2)-receptor inducing factor(s). I. Regulation of IL 2 receptor on a natural killer-like cell line (YT cells).

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1388096

Sequence and comparative analysis of the rabbit alpha-like globin gene cluster reveals a rapid mode of evolution in a G + C-rich region of mammalian genomes

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1388096

Cell-type-restricted binding of the transcription factor NFAT to a distal IL-4 enhancer in vivo

31 May 2018

1 reference

12 December 2020

The role of T3 surface molecules in the activation of human T cells: a two-stimulus requirement for IL 2 production reflects events occurring at a pre-translational level

1 reference

12 December 2020

Acid depurination after field inversion agarose gel electrophoresis reduces transfer of large DNA molecules

1 reference

12 December 2020

Ultraviolet nicking of large DNA molecules from pulsed-field gels for southern transfer and hybridization

1 reference

12 December 2020

Perforin expression in human peripheral blood mononuclear cells. Definition of an IL-2-independent pathway of perforin induction in CD8+ T cells

1 reference

12 December 2020

Transgenic control of perforin gene expression. Functional evidence for two separate control regions

1 reference

12 December 2020

Long-range chromatin analysis of the human MYC locus by pulsed-field gel electrophoresis

1 reference

12 December 2020

Modulation of chromatin structure regulates cytokine gene expression during T cell differentiation

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKL006

1 reference

6 July 2017

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6 July 2017

1 reference