(Q31102284)

28 June 2017

1 reference

title

Bioinformatics for the 'bench biologist': how to find regulatory regions in genomic DNA. (English)

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28 June 2017

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4

Anjana Rao

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28 June 2017

Julie Nardone

1

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28 June 2017

Dong U Lee

series ordinal

2

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28 June 2017

K Mark Ansel

series ordinal

3

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28 June 2017

language of work or name

English

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publication date

1 August 2004

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28 June 2017

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28 June 2017

5

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28 June 2017

768-774

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28 June 2017

8

1 reference

Transcription regulation and animal diversity

28 June 2017

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Histone and chromatin cross-talk

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Modularity and reshuffling of Snail and Slug expression during vertebrate evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

The origins of genome complexity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

A differentially methylated region within the gene Kcnq1 functions as an imprinted promoter and silencer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Identification of a Coordinate Regulator of Interleukins 4, 13, and 5 by Cross-Species Sequence Comparisons

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Genomic strategies to identify mammalian regulatory sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Cross-species sequence comparisons: a review of methods and available resources

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Comparative genomic tools and databases: providing insights into the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Applied bioinformatics for the identification of regulatory elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Th2-specific DNase I-hypersensitive sites in the murine IL-13 and IL-4 intergenic region.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Deletion of a coordinate regulator of type 2 cytokine expression in mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Chromatin structure and gene regulation in the immune system

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

An epigenetic view of helper T cell differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

The basis for IL-2-induced IL-2 receptor alpha chain gene regulation: importance of two widely separated IL-2 response elements.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Long-range comparison of human and mouse SCL loci: localized regions of sensitivity to restriction endonucleases correspond precisely with peaks of conserved noncoding sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Comparative and functional analyses of LYL1 loci establish marsupial sequences as a model for phylogenetic footprinting.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Comparative genomics of the human and mouse T cell receptor loci

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Instruction of distinct CD4 T helper cell fates by different notch ligands on antigen-presenting cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Natural killer T cells: natural or unnatural regulators of autoimmunity?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Regulation of IL-4 production in mast cells: a paradigm for cell-type-specific gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Computational and biological analysis of 680 kb of DNA sequence from the human 5q31 cytokine gene cluster region

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Th2 lineage commitment and efficient IL-4 production involves extended demethylation of the IL-4 gene.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

An intron transcriptional enhancer element regulates IL-4 gene locus accessibility in mast cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Evidence for stabilizing selection in a eukaryotic enhancer element.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Perspective: Evolutionary developmental biology and the problem of variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Evolution of genes and taxa: a primer

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Molecular evidence for an ancient duplication of the entire yeast genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Comparative genomic analysis reveals independent expansion of a lineage-specific gene family in vertebrates: the class II cytokine receptors and their ligands in mammals and fish

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

21 January 2018

An overview of Ensembl

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Database resources of the National Center for Biotechnology Information: update

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

The UCSC Genome Browser Database

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

The closest BLAST hit is often not the nearest neighbor.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

A review and comparison of the murine alpha1-antitrypsin and alpha1-antichymotrypsin multigene clusters with the human clade A serpins

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Comparative analyses of multi-species sequences from targeted genomic regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Quantitative Estimates of Sequence Divergence for Comparative Analyses of Mammalian Genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Benchmarking tools for the alignment of functional noncoding DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

AVID: A global alignment program

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

VISTA : visualizing global DNA sequence alignments of arbitrary length

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Human-mouse alignments with BLASTZ

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

PipMaker--a web server for aligning two genomic DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Fast and sensitive multiple alignment of large genomic sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Nuclease hypersensitive sites in chromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Hierarchical interactions control CD4 gene expression during thymocyte development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

IL-4 acts as a myoblast recruitment factor during mammalian muscle growth

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

The insulation of genes from external enhancers and silencing chromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Identifying gene regulatory elements by genome-wide recovery of DNase hypersensitive sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Combined deletion of CD8 locus cis-regulatory elements affects initiation but not maintenance of CD8 expression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Evidence for distinct CD4 silencer functions at different stages of thymocyte differentiation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Differential requirements for Runx proteins in CD4 repression and epigenetic silencing during T lymphocyte development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

DNA methylation patterns and epigenetic memory

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

Identification of conserved regulatory elements by comparative genome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

The evolution of transcriptional regulation in eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

From genotype to phenotype: buffering mechanisms and the storage of genetic information

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

The protein CTCF is required for the enhancer blocking activity of vertebrate insulators

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

A novel transcription factor, T-bet, directs Th1 lineage commitment

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

rVista for comparative sequence-based discovery of functional transcription factor binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

7 January 2021

Modulation of chromatin structure regulates cytokine gene expression during T cell differentiation

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

7 January 2021

Cell-type-restricted binding of the transcription factor NFAT to a distal IL-4 enhancer in vivo

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

7 January 2021

Regulation of IL-4 gene expression by distal regulatory elements and GATA-3 at the chromatin level

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

7 January 2021

A 3' enhancer in the IL-4 gene regulates cytokine production by Th2 cells and mast cells

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

7 January 2021

A Distal Enhancer in the Interferon-γ (IFN-γ) Locus Revealed by Genome Sequence Comparison

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

7 January 2021

Regulation of the Th2 cytokine locus by a locus control region

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

7 January 2021

Identification of a conserved GATA3 response element upstream proximal from the interleukin-13 gene locus

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

7 January 2021

T(H) cell differentiation is accompanied by dynamic changes in histone acetylation of cytokine genes.

1 reference

https://api.crossref.org/works/10.1038%2FNI0804-768

7 January 2021

Identifiers

DOI

10.1038/NI0804-768

1 reference

28 June 2017

1 reference