(Q26776526)

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

An integrated map of genetic variation from 1,092 human genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Repetitive DNA and next-generation sequencing: computational challenges and solutions

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Adaptive seeds tame genomic sequence comparison

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Designing Efficient Spaced Seeds for SOLiD Read Mapping

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

GASSST: global alignment short sequence search tool

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

International network of cancer genome projects

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

BFAST: an alignment tool for large scale genome resequencing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Fast mapping of short sequences with mismatches, insertions and deletions using index structures

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

SHRiMP: accurate mapping of short color-space reads

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Fast and accurate short read alignment with Burrows-Wheeler transform

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Mapping short DNA sequencing reads and calling variants using mapping quality scores

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

ZOOM! Zillions of oligos mapped

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Versatile and open software for comparing large genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Basic local alignment search tool

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Ionotropic GABA receptor antagonism-induced adverse outcome pathways for potential neurotoxicity biomarkers

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Biomarker-based drug safety assessment in the age of systems pharmacology: from foundational to regulatory science

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Molecular regulation of miRNAs and potential biomarkers in the progression of hepatic steatosis to NASH

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

microRNAs as pharmacogenomic biomarkers for drug efficacy and drug safety assessment

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Fast gapped-read alignment with Bowtie 2

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Identification of common molecular subsequences

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

A general method applicable to the search for similarities in the amino acid sequence of two proteins

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

PatternHunter: faster and more sensitive homology search

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

NextGenMap: fast and accurate read mapping in highly polymorphic genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

The GEM mapper: fast, accurate and versatile alignment by filtration

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Long read alignment based on maximal exact match seeds

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows-Wheeler transform

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

SHRiMP2: sensitive yet practical SHort Read Mapping

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

The GNUMAP algorithm: unbiased probabilistic mapping of oligonucleotides from next-generation sequencing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

SOAP2: an improved ultrafast tool for short read alignment

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

How to map billions of short reads onto genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

SOAP: short oligonucleotide alignment program

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

SOAP3-dp: fast, accurate and sensitive GPU-based short read aligner

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

A new initiative on precision medicine

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

SSAHA: a fast search method for large DNA databases

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Comparison of RNA-seq and microarray-based models for clinical endpoint prediction

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Whole genome sequencing of 35 individuals provides insights into the genetic architecture of Korean population

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Toxicogenomics and cancer susceptibility: advances with next-generation sequencing.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

MOSAIK: a hash-based algorithm for accurate next-generation sequencing short-read mapping

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Critical role of bioinformatics in translating huge amounts of next-generation sequencing data into personalized medicine

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Technical reproducibility of genotyping SNP arrays used in genome-wide association studies

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

RazerS 3: faster, fully sensitive read mapping

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Next generation sequencing for profiling expression of miRNAs: technical progress and applications in drug development

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Unipro UGENE: a unified bioinformatics toolkit

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

SOAP3: ultra-fast GPU-based parallel alignment tool for short reads

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

BarraCUDA - a fast short read sequence aligner using graphics processing units

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Hobbes: optimized gram-based methods for efficient read alignment

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Sensitive and fast mapping of di-base encoded reads

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Next-generation sequencing and its applications in molecular diagnostics

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

An alignment algorithm for bisulfite sequencing using the Applied Biosystems SOLiD System

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

A survey of sequence alignment algorithms for next-generation sequencing

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Molecular biomarkers: a US FDA effort

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Assessing sources of inconsistencies in genotypes and their effects on genome-wide association studies with HapMap samples.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Building the sequence map of the human pan-genome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Sense from sequence reads: methods for alignment and assembly

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Updates to the RMAP short-read mapping software

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

A practical algorithm for finding maximal exact matches in large sequence datasets using sparse suffix arrays

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

CloudBurst: highly sensitive read mapping with MapReduce

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

SeqMap: mapping massive amount of oligonucleotides to the genome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Optimal spliced alignments of short sequence reads

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Using quality scores and longer reads improves accuracy of Solexa read mapping

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Quality control and quality assessment of data from surface-enhanced laser desorption/ionization (SELDI) time-of flight (TOF) mass spectrometry (MS).

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

CUSHAW3: sensitive and accurate base-space and color-space short-read alignment with hybrid seeding

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

MOM: maximum oligonucleotide mapping

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695832

Advancing translation of biomarkers into regulatory science.

31 May 2018

1 reference

https://api.crossref.org/works/10.3390%2FPHARMACEUTICS7040523

Batch effects in the BRLMM genotype calling algorithm influence GWAS results for the Affymetrix 500K array.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FPHARMACEUTICS7040523

Evaluating variations of genotype calling: a potential source of spurious associations in genome-wide association studies

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FPHARMACEUTICS7040523

Assessment of variability in GWAS with CRLMM genotyping algorithm on WTCCC coronary artery disease.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FPHARMACEUTICS7040523

Variability in GWAS analysis: the impact of genotype calling algorithm inconsistencies.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FPHARMACEUTICS7040523

Quality control metrics improve repeatability and reproducibility of single-nucleotide variants derived from whole-genome sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FPHARMACEUTICS7040523

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FPHARMACEUTICS7040523

The correlation of gene expression and co-regulated gene patterns in characteristic KEGG pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FPHARMACEUTICS7040523

PASS: a program to align short sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FPHARMACEUTICS7040523

Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FPHARMACEUTICS7040523

PRIMEX: rapid identification of oligonucleotide matches in whole genomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FPHARMACEUTICS7040523

Isaac: ultra-fast whole-genome secondary analysis on Illumina sequencing platforms

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FPHARMACEUTICS7040523

The smallest automation recognizing the subwords of a text

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FPHARMACEUTICS7040523

Replacing suffix trees with enhanced suffix arrays

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FPHARMACEUTICS7040523

Efficient multiple genome alignment.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FPHARMACEUTICS7040523

slaMEM: efficient retrieval of maximal exact matches using a sampled LCP array.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FPHARMACEUTICS7040523

E-MEM: efficient computation of maximal exact matches for very large genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FPHARMACEUTICS7040523

Erratum: Repetitive DNA and next-generation sequencing: computational challenges and solutions

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FPHARMACEUTICS7040523

Emerging efforts for discovering new biomarkers of liver disease and hepatotoxicity

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26610555

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

AMAS: a fast tool for alignment manipulation and computing of summary statistics

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26610555

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.3390/PHARMACEUTICS7040523

1 reference

1468232

1468232

1 reference

1 reference

1 reference