(Q26795701)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26323632%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

title

Analyses of Intestinal Microbiota: Culture versus Sequencing (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26323632%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26323632%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

author name string

Joachim Gläsner

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26323632%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

Udo Reischl

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26323632%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

André Gessner

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26323632%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

language of work or name

English

0 references

publication date

1 January 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26323632%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26323632%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

volume

56

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26323632%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

issue

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26323632%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

page(s)

228-240

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26323632%20AND%20SRC:MED&resulttype=core&format=json

Influence of DNA extraction on oral microbial profiles obtained via 16S rRNA gene sequencing

23 February 2020

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Freezing fecal samples prior to DNA extraction affects the Firmicutes to Bacteroidetes ratio determined by downstream quantitative PCR analysis.

21 January 2018

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QIIME allows analysis of high-throughput community sequencing data

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An efficient multistrategy DNA decontamination procedure of PCR reagents for hypersensitive PCR applications

21 January 2018

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The Unculturables: targeted isolation of bacterial species associated with canine periodontal health or disease from dental plaque

21 January 2018

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The gut microbiota of a patient with resistant tuberculosis is more comprehensively studied by culturomics than by metagenomics

21 January 2018

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Culturomics and pyrosequencing evidence of the reduction in gut microbiota diversity in patients with broad-spectrum antibiotics

21 January 2018

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21 January 2018

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Contamination of Qiagen DNA extraction kits with Legionella DNA.

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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Relating the metatranscriptome and metagenome of the human gut.

21 January 2018

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Assessing the consequences of denoising marker-based metagenomic data

21 January 2018

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Genetic diversity in Sargasso Sea bacterioplankton

21 January 2018

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Contamination of diverse nifH and nifH-like DNA into commercial PCR primers.

21 January 2018

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Archaea and fungi of the human gut microbiome: correlations with diet and bacterial residents

21 January 2018

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Molecular studies neglect apparently gram-negative populations in the human gut microbiota

21 January 2018

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Structure, function and diversity of the healthy human microbiome

21 January 2018

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Isolating "uncultivable" microorganisms in pure culture in a simulated natural environment

21 January 2018

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Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

21 January 2018

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Microbial culturomics: paradigm shift in the human gut microbiome study

21 January 2018

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The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota

21 January 2018

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Human gut microbiota: repertoire and variations

21 January 2018

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Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

21 January 2018

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Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples

21 January 2018

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Richness of human gut microbiome correlates with metabolic markers

21 January 2018

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An integrated catalog of reference genes in the human gut microbiome

21 January 2018

1 reference

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Comparison of next-generation sequencing systems

21 January 2018

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Gene-targeted microfluidic cultivation validated by isolation of a gut bacterium listed in Human Microbiome Project's Most Wanted taxa.

21 January 2018

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The RDP (Ribosomal Database Project).

21 January 2018

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Host-microorganism interactions in lung diseases

21 January 2018

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Waste not, want not: why rarefying microbiome data is inadmissible

21 January 2018

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How to deal with PCR contamination in molecular microbial ecology.

21 January 2018

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A framework for human microbiome research

21 January 2018

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Emerging technologies in DNA sequencing

21 January 2018

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Short-read assembly of full-length 16S amplicons reveals bacterial diversity in subsurface sediments

21 January 2018

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Efficacy of a 3rd generation high-throughput sequencing platform for analyses of 16S rRNA genes from environmental samples

21 January 2018

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Improved performance of the PacBio SMRT technology for 16S rDNA sequencing.

21 January 2018

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Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

21 January 2018

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Establishing the independent culture of a strictly symbiotic bacterium Symbiobacterium thermophilum from its supporting Bacillus strain

21 January 2018

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Pyrosequence read length of 16S rRNA gene affects phylogenetic assignment of plant-associated bacteria

21 January 2018

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Microbial ecology and evolution: a ribosomal RNA approach

21 January 2018

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Effects of OTU clustering and PCR artifacts on microbial diversity estimates

21 January 2018

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The NIH Human Microbiome Project

21 January 2018

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Culturomics identified 11 new bacterial species from a single anorexia nervosa stool sample

21 January 2018

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PCR biases distort bacterial and archaeal community structure in pyrosequencing datasets

21 January 2018

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Data analysis for 16S microbial profiling from different benchtop sequencing platforms

21 January 2018

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A human gut microbial gene catalogue established by metagenomic sequencing

21 January 2018

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SASI-Seq: sample assurance Spike-Ins, and highly differentiating 384 barcoding for Illumina sequencing

21 January 2018

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The first 1000 cultured species of the human gastrointestinal microbiota.

21 January 2018

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Diversity of the human gastrointestinal tract microbiota revisited.

21 January 2018

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Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: effective recovery of bacterial and archaeal DNA using mechanical cell lysis

21 January 2018

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Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

21 January 2018

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A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase

21 January 2018

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DNA sequencing with chain-terminating inhibitors

21 January 2018

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Processing faecal samples: a step forward for standards in microbial community analysis

21 January 2018

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The real cost of sequencing: higher than you think!

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FILAR%2FILV017

Accumulation of 30S preribosomal ribonucleic acid in an Escherichia coli mutant treated with chloramphenicol.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FILAR%2FILV017

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FILAR%2FILV017

PCR inhibitors - occurrence, properties and removal

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FILAR%2FILV017

Gut microbiota in health and disease

21 January 2018

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High-throughput sequencing of 16S rRNA gene amplicons: effects of extraction procedure, primer length and annealing temperature

21 January 2018

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The gut microbiome in health and in disease

21 January 2018

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Axenic culture of fastidious and intracellular bacteria

21 January 2018

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Sequence depth, not PCR replication, improves ecological inference from next generation DNA sequencing

21 January 2018

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Electron transfer in syntrophic communities of anaerobic bacteria and archaea

21 January 2018

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Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon

21 January 2018

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Contamination of commercial PCR master mix with DNA from Coxiella burnetii

21 January 2018

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https://api.crossref.org/works/10.1093%2FILAR%2FILV017

A systematic search for discriminating sites in the 16S ribosomal RNA gene

21 January 2018

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https://api.crossref.org/works/10.1093%2FILAR%2FILV017

16S rRNA sequences reveal numerous uncultured microorganisms in a natural community

21 January 2018

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Genomic approaches to studying the human microbiota

21 January 2018

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Choice of bacterial DNA extraction method from fecal material influences community structure as evaluated by metagenomic analysis

21 January 2018

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Persistence of DNA studied in different ex vivo and in vivo rat models simulating the human gut situation.

21 January 2018

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Phylogenetic structure of the prokaryotic domain: The primary kingdoms

21 January 2018

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Metagenomics: read length matters

21 January 2018

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Integrity of bacterial genomic DNA after autoclaving: possible implications for horizontal gene transfer and clinical waste management

21 January 2018

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Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences

21 January 2018

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Cotranscriptional recruitment of yeast TRAMP complex to intronic sequences promotes optimal pre-mRNA splicing.

21 January 2018

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https://api.crossref.org/works/10.1093%2FILAR%2FILV017

Diet and feeding pattern affect the diurnal dynamics of the gut microbiome

21 January 2018

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https://api.crossref.org/works/10.1093%2FILAR%2FILV017

Mono-association of mice with non-cultivable, intestinal, segmented, filamentous bacteria

21 January 2018

1 reference

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inferred from DOI database lookup

7 January 2021

based on heuristic

Screening of a fosmid library of marine environmental genomic DNA fragments reveals four clones related to members of the order Planctomycetales

1 reference

https://api.crossref.org/works/10.1093%2FILAR%2FILV017

inferred from DOI database lookup

7 January 2021

based on heuristic

Predominant Gram-Positive Bacteria in Human Feces: Numbers, Variety, and Persistence

1 reference

https://api.crossref.org/works/10.1093%2FILAR%2FILV017

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1093/ILAR/ILV017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26323632%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

1 reference