(Q33777594)

29 July 2017

title

Choice of bacterial DNA extraction method from fecal material influences community structure as evaluated by metagenomic analysis (English)

1 reference

29 July 2017

0 references

1 reference

6

Ramneek Gupta

1 reference

29 July 2017

Thomas Sicheritz-Ponten

5

Thomas Sicheritz-Pontén

0 references

Martin Iain Bahl

Martin Iain Bahl

2

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Tine Rask Licht

Tine Rask Licht

7

0 references

Karsten Kristiansen

4

Karsten Kristiansen

1 reference

29 July 2017

author name string

Agata Wesolowska-Andersen

1

1 reference

29 July 2017

Vera Carvalho

3

1 reference

29 July 2017

publication date

5 June 2014

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29 July 2017

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29 July 2017

volume

2

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29 July 2017

page(s)

19

1 reference

describes a project that uses

29 July 2017

ggplot2

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=4063427

ggplot2

2 references

10 June 2022

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/2049-2618-2-19

0 references

cites work

Effect of DNA extraction methods and sampling techniques on the apparent structure of cow and sheep rumen microbial communities

1 reference

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Richness of human gut microbiome correlates with metabolic markers

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063427

MOCAT: a metagenomics assembly and gene prediction toolkit

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063427

CD-HIT: accelerated for clustering the next-generation sequencing data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063427

Biases during DNA extraction of activated sludge samples revealed by high throughput sequencing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063427

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063427

Performance comparison of benchtop high-throughput sequencing platforms

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063427

Direct comparisons of Illumina vs. Roche 454 sequencing technologies on the same microbial community DNA sample

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063427

eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

4 July 2018

1 reference

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Comparing de novo genome assembly: the long and short of it

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063427

Enterotypes of the human gut microbiome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063427

Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063427

A human gut microbial gene catalogue established by metagenomic sequencing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063427

Fast and accurate long-read alignment with Burrows-Wheeler transform

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063427

BLAST+: architecture and applications

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063427

The NIH Human Microbiome Project

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063427

''R"--project for statistical computing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063427

The human microbiome project

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063427

An obesity-associated gut microbiome with increased capacity for energy harvest

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063427

Microbial ecology: human gut microbes associated with obesity

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063427

A microbial world within us

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063427

Toward Automatic Reconstruction of a Highly Resolved Tree of Life

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063427

Mucosa-associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063427

Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063427

Freezing fecal samples prior to DNA extraction affects the Firmicutes to Bacteroidetes ratio determined by downstream quantitative PCR analysis.

4 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F2049-2618-2-19

Commercial DNA extraction kits impact observed microbial community composition in permafrost samples

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F2049-2618-2-19

Targeted and shotgun metagenomic approaches provide different descriptions of dryland soil microbial communities in a manipulated field study.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F2049-2618-2-19

Freezing at -800 degrees C distorts the DNA composition of bacterial communities in intestinal samples

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24949196

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/2049-2618-2-19

1 reference

Dimensions Publication ID

29 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/2049-2618-2-19

9 September 2019

1 reference

29 July 2017

1 reference