(Q34990348)

5 August 2017

title

Effect of DNA extraction methods and sampling techniques on the apparent structure of cow and sheep rumen microbial communities (English)

1 reference

5 August 2017

Gemma Henderson

1

0 references

Sandra Kittelmann

3

object named as

Sandra Kittelmann

1 reference

5 August 2017

Faith Cox

2

1 reference

5 August 2017

Vahideh Heidarian Miri

4

1 reference

5 August 2017

Michael Zethof

5

1 reference

5 August 2017

Samantha J Noel

6

1 reference

5 August 2017

Garry C Waghorn

7

1 reference

5 August 2017

Peter H Janssen

8

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5 August 2017

language of work or name

English

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publication date

11 September 2013

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5 August 2017

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5 August 2017

volume

8

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5 August 2017

issue

9

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5 August 2017

page(s)

e74787

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Creative Commons Attribution 4.0 International

5 August 2017

copyright license

start time

11 September 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Simultaneous amplicon sequencing to explore co-occurrence patterns of bacterial, archaeal and eukaryotic microorganisms in rumen microbial communities

1 reference

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DNA extract characterization process for microbial detection methods development and validation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3770609

Next generation sequencing to define prokaryotic and fungal diversity in the bovine rumen

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3770609

"Methanoplasmatales," Thermoplasmatales-related archaea in termite guts and other environments, are the seventh order of methanogens

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3770609

Nitrogen metabolism and rumen microbial enumeration in lactating cows with divergent residual feed intake fed high-digestibility pasture

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3770609

A proposed taxonomy of anaerobic fungi (class neocallimastigomycetes) suitable for large-scale sequence-based community structure analysis

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3770609

Comparison of DNA extraction methods for microbial community profiling with an application to pediatric bronchoalveolar lavage samples

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3770609

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

8 July 2018

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Phage-bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3770609

Microbiome analysis of dairy cows fed pasture or total mixed ration diets.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3770609

Methanogen community structure in the rumens of farmed sheep, cattle and red deer fed different diets

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3770609

Status of the phylogenetic diversity census of ruminal microbiomes.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3770609

Characterization of rumen ciliate community composition in domestic sheep, deer, and cattle, feeding on varying diets, by means of PCR-DGGE and clone libraries

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3770609

The effects from DNA extraction methods on the evaluation of microbial diversity associated with human colonic tissue

8 July 2018

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Comparison of DNA extraction kits for PCR-DGGE analysis of human intestinal microbial communities from fecal specimens

8 July 2018

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QIIME allows analysis of high-throughput community sequencing data

8 July 2018

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Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: effective recovery of bacterial and archaeal DNA using mechanical cell lysis

8 July 2018

1 reference

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Rumen bacterial diversity dynamics associated with changing from bermudagrass hay to grazed winter wheat diets.

8 July 2018

1 reference

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High prevalence of Methanobrevibacter smithii and Methanosphaera stadtmanae detected in the human gut using an improved DNA detection protocol

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3770609

Structure of the archaeal community of the rumen

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3770609

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8 July 2018

1 reference

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8 July 2018

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Influence of DNA isolation on Q-PCR-based quantification of methanogenic Archaea in biogas fermenters.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0074787

Evaluation of real-time PCR amplification efficiencies to detect PCR inhibitors.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0074787

Technical note: Bacterial diversity and fermentation end products in rumen fluid samples collected via oral lavage or rumen cannula

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0074787

Phylogeny of the rumen ciliates Entodinium, Epidinium and Polyplastron (Litostomatea:Entodiniomorphida) inferred from small subunit ribosomal RNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0074787

Enhanced sensitivity of DNA- and rRNA-based stable isotope probing by fractionation and quantitative analysis of isopycnic centrifugation gradients

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0074787

Improved extraction of PCR-quality community DNA from digesta and fecal samples

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3770609

Comparison of different methods for the isolation and purification of total community DNA from soil

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24040342

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Insertion depth of oral stomach tubes may affect the fermentation parameters of ruminal fluid collected in dairy cows

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24040342

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A comparison of five methods for extraction of bacterial DNA from human faecal samples

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24040342

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0074787

1 reference

5 August 2017

0 references

1 reference

5 August 2017

1 reference