(Q51567225)

English

Targeted and shotgun metagenomic approaches provide different descriptions of dryland soil microbial communities in a manipulated field study.

scientific article published on 10 February 2012

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scholarly article

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Europe PubMed Central

PubMed publication ID

7 April 2018

http://europepmc.org/abstract/MED/23757280

Targeted and shotgun metagenomic approaches provide different descriptions of dryland soil microbial communities in a manipulated field study. (English)

1 reference

Europe PubMed Central

PubMed publication ID

7 April 2018

http://europepmc.org/abstract/MED/23757280

1 reference

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based on heuristic

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1 reference

Europe PubMed Central

PubMed publication ID

7 April 2018

http://europepmc.org/abstract/MED/23757280

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Cheryl R Kuske

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Europe PubMed Central

PubMed publication ID

7 April 2018

http://europepmc.org/abstract/MED/23757280

La Verne Gallegos-Graves

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object named as

La Verne Gallegos-Graves

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Europe PubMed Central

PubMed publication ID

7 April 2018

http://europepmc.org/abstract/MED/23757280

author name string

Shawn R Starkenburg

3

1 reference

Europe PubMed Central

PubMed publication ID

7 April 2018

http://europepmc.org/abstract/MED/23757280

Patrick S Chain

4

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Europe PubMed Central

PubMed publication ID

7 April 2018

http://europepmc.org/abstract/MED/23757280

publication date

10 February 2012

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Europe PubMed Central

PubMed publication ID

7 April 2018

http://europepmc.org/abstract/MED/23757280

Environmental Microbiology Reports

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Europe PubMed Central

PubMed publication ID

7 April 2018

http://europepmc.org/abstract/MED/23757280

4

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Europe PubMed Central

PubMed publication ID

7 April 2018

http://europepmc.org/abstract/MED/23757280

2

1 reference

Europe PubMed Central

PubMed publication ID

7 April 2018

http://europepmc.org/abstract/MED/23757280

248-256

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Europe PubMed Central

PubMed publication ID

7 April 2018

http://europepmc.org/abstract/MED/23757280

At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies

1 reference

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Microbial contributions to climate change through carbon cycle feedbacks

1 reference

https://api.crossref.org/works/10.1111%2FJ.1758-2229.2012.00328.X

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Soil microbial community responses to multiple experimental climate change drivers

1 reference

https://api.crossref.org/works/10.1111%2FJ.1758-2229.2012.00328.X

21 January 2018

The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis

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https://api.crossref.org/works/10.1111%2FJ.1758-2229.2012.00328.X

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Experimental factors affecting PCR-based estimates of microbial species richness and evenness.

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Molecular microbial ecology: land of the one-eyed king

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Phylogenetic and morphological diversity of cyanobacteria in soil desert crusts from the Colorado plateau.

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Systematic artifacts in metagenomes from complex microbial communities.

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MEGAN analysis of metagenomic data

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A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses

1 reference

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KEGG for linking genomes to life and the environment

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A bioinformatician's guide to metagenomics

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Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

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21 January 2018

Comparison of soil bacterial communities in rhizospheres of three plant species and the interspaces in an arid grassland

1 reference

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21 January 2018

Community assembly of biological soil crusts of different successional stages in a temperate sand ecosystem, as assessed by direct determination and enrichment techniques

1 reference

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21 January 2018

LUCY2: an interactive DNA sequence quality trimming and vector removal tool.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1758-2229.2012.00328.X

21 January 2018

Effects of elevated atmospheric CO2 on soil microbial biomass, activity, and diversity in a chaparral ecosystem

1 reference

https://api.crossref.org/works/10.1111%2FJ.1758-2229.2012.00328.X

21 January 2018

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

1 reference

https://api.crossref.org/works/10.1111%2FJ.1758-2229.2012.00328.X

21 January 2018

Metagenomic sequencing of an in vitro-simulated microbial community

1 reference

https://api.crossref.org/works/10.1111%2FJ.1758-2229.2012.00328.X

21 January 2018

The prokaryotic diversity of biological soil crusts in the Sonoran Desert (Organ Pipe Cactus National Monument, AZ).

1 reference

https://api.crossref.org/works/10.1111%2FJ.1758-2229.2012.00328.X

21 January 2018

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

1 reference

https://api.crossref.org/works/10.1111%2FJ.1758-2229.2012.00328.X

21 January 2018

Identifying biologically relevant differences between metagenomic communities

1 reference

https://api.crossref.org/works/10.1111%2FJ.1758-2229.2012.00328.X

21 January 2018

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

1 reference

https://api.crossref.org/works/10.1111%2FJ.1758-2229.2012.00328.X

21 January 2018

MetaSim: a sequencing simulator for genomics and metagenomics

1 reference

https://api.crossref.org/works/10.1111%2FJ.1758-2229.2012.00328.X

21 January 2018

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

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https://api.crossref.org/works/10.1111%2FJ.1758-2229.2012.00328.X

21 January 2018

A survey of the methods for the characterization of microbial consortia and communities

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https://api.crossref.org/works/10.1111%2FJ.1758-2229.2012.00328.X

21 January 2018

MLTreeMap--accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies

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https://api.crossref.org/works/10.1111%2FJ.1758-2229.2012.00328.X

21 January 2018

Genome of the cyanobacterium Microcoleus vaginatus FGP-2, a photosynthetic ecosystem engineer of arid land soil biocrusts worldwide

1 reference

https://api.crossref.org/works/10.1111%2FJ.1758-2229.2012.00328.X

21 January 2018

A renaissance for the pioneering 16S rRNA gene

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https://api.crossref.org/works/10.1111%2FJ.1758-2229.2012.00328.X

21 January 2018

Comparative metagenomics of microbial communities

1 reference

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21 January 2018

An obesity-associated gut microbiome with increased capacity for energy harvest

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21 January 2018

Statistical methods for detecting differentially abundant features in clinical metagenomic samples

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21 January 2018

Diazotrophic community structure and function in two successional stages of biological soil crusts from the Colorado Plateau and Chihuahuan Desert

1 reference

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21 January 2018

Three distinct clades of cultured heterocystous cyanobacteria constitute the dominant N2-fixing members of biological soil crusts of the Colorado Plateau, USA.

1 reference

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21 January 2018

Human gut microbiota in obesity and after gastric bypass

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Below-ground process responses to elevated CO2 and temperature: a discussion of observations, measurement methods, and models

1 reference

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21 January 2018

Salt tolerance of Microcoleus vaginatus Gom., a cyanobacterium isolated from desert algal crust, was enhanced by exogenous carbohydrates

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21 January 2018

Identifiers

10.1111/J.1758-2229.2012.00328.X

1 reference

Europe PubMed Central

PubMed publication ID

7 April 2018

http://europepmc.org/abstract/MED/23757280

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

7 April 2018

http://europepmc.org/abstract/MED/23757280

ResearchGate publication ID

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